Starter Code

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/__init__.py

@@ -0,0 +1,15 @@
+"""distutils
+
+The main package for the Python Module Distribution Utilities.  Normally
+used from a setup script as
+
+   from distutils.core import setup
+
+   setup (...)
+"""
+
+import sys
+
+__version__ = sys.version[:sys.version.index(' ')]
+
+local = True

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/_msvccompiler.py

@@ -0,0 +1,561 @@
+"""distutils._msvccompiler
+
+Contains MSVCCompiler, an implementation of the abstract CCompiler class
+for Microsoft Visual Studio 2015.
+
+The module is compatible with VS 2015 and later. You can find legacy support
+for older versions in distutils.msvc9compiler and distutils.msvccompiler.
+"""
+
+# Written by Perry Stoll
+# hacked by Robin Becker and Thomas Heller to do a better job of
+#   finding DevStudio (through the registry)
+# ported to VS 2005 and VS 2008 by Christian Heimes
+# ported to VS 2015 by Steve Dower
+
+import os
+import subprocess
+import contextlib
+import warnings
+import unittest.mock
+with contextlib.suppress(ImportError):
+    import winreg
+
+from distutils.errors import DistutilsExecError, DistutilsPlatformError, \
+                             CompileError, LibError, LinkError
+from distutils.ccompiler import CCompiler, gen_lib_options
+from distutils import log
+from distutils.util import get_platform
+
+from itertools import count
+
+def _find_vc2015():
+    try:
+        key = winreg.OpenKeyEx(
+            winreg.HKEY_LOCAL_MACHINE,
+            r"Software\Microsoft\VisualStudio\SxS\VC7",
+            access=winreg.KEY_READ | winreg.KEY_WOW64_32KEY
+        )
+    except OSError:
+        log.debug("Visual C++ is not registered")
+        return None, None
+
+    best_version = 0
+    best_dir = None
+    with key:
+        for i in count():
+            try:
+                v, vc_dir, vt = winreg.EnumValue(key, i)
+            except OSError:
+                break
+            if v and vt == winreg.REG_SZ and os.path.isdir(vc_dir):
+                try:
+                    version = int(float(v))
+                except (ValueError, TypeError):
+                    continue
+                if version >= 14 and version > best_version:
+                    best_version, best_dir = version, vc_dir
+    return best_version, best_dir
+
+def _find_vc2017():
+    """Returns "15, path" based on the result of invoking vswhere.exe
+    If no install is found, returns "None, None"
+
+    The version is returned to avoid unnecessarily changing the function
+    result. It may be ignored when the path is not None.
+
+    If vswhere.exe is not available, by definition, VS 2017 is not
+    installed.
+    """
+    root = os.environ.get("ProgramFiles(x86)") or os.environ.get("ProgramFiles")
+    if not root:
+        return None, None
+
+    try:
+        path = subprocess.check_output([
+            os.path.join(root, "Microsoft Visual Studio", "Installer", "vswhere.exe"),
+            "-latest",
+            "-prerelease",
+            "-requires", "Microsoft.VisualStudio.Component.VC.Tools.x86.x64",
+            "-property", "installationPath",
+            "-products", "*",
+        ], encoding="mbcs", errors="strict").strip()
+    except (subprocess.CalledProcessError, OSError, UnicodeDecodeError):
+        return None, None
+
+    path = os.path.join(path, "VC", "Auxiliary", "Build")
+    if os.path.isdir(path):
+        return 15, path
+
+    return None, None
+
+PLAT_SPEC_TO_RUNTIME = {
+    'x86' : 'x86',
+    'x86_amd64' : 'x64',
+    'x86_arm' : 'arm',
+    'x86_arm64' : 'arm64'
+}
+
+def _find_vcvarsall(plat_spec):
+    # bpo-38597: Removed vcruntime return value
+    _, best_dir = _find_vc2017()
+
+    if not best_dir:
+        best_version, best_dir = _find_vc2015()
+
+    if not best_dir:
+        log.debug("No suitable Visual C++ version found")
+        return None, None
+
+    vcvarsall = os.path.join(best_dir, "vcvarsall.bat")
+    if not os.path.isfile(vcvarsall):
+        log.debug("%s cannot be found", vcvarsall)
+        return None, None
+
+    return vcvarsall, None
+
+def _get_vc_env(plat_spec):
+    if os.getenv("DISTUTILS_USE_SDK"):
+        return {
+            key.lower(): value
+            for key, value in os.environ.items()
+        }
+
+    vcvarsall, _ = _find_vcvarsall(plat_spec)
+    if not vcvarsall:
+        raise DistutilsPlatformError("Unable to find vcvarsall.bat")
+
+    try:
+        out = subprocess.check_output(
+            'cmd /u /c "{}" {} && set'.format(vcvarsall, plat_spec),
+            stderr=subprocess.STDOUT,
+        ).decode('utf-16le', errors='replace')
+    except subprocess.CalledProcessError as exc:
+        log.error(exc.output)
+        raise DistutilsPlatformError("Error executing {}"
+                .format(exc.cmd))
+
+    env = {
+        key.lower(): value
+        for key, _, value in
+        (line.partition('=') for line in out.splitlines())
+        if key and value
+    }
+
+    return env
+
+def _find_exe(exe, paths=None):
+    """Return path to an MSVC executable program.
+
+    Tries to find the program in several places: first, one of the
+    MSVC program search paths from the registry; next, the directories
+    in the PATH environment variable.  If any of those work, return an
+    absolute path that is known to exist.  If none of them work, just
+    return the original program name, 'exe'.
+    """
+    if not paths:
+        paths = os.getenv('path').split(os.pathsep)
+    for p in paths:
+        fn = os.path.join(os.path.abspath(p), exe)
+        if os.path.isfile(fn):
+            return fn
+    return exe
+
+# A map keyed by get_platform() return values to values accepted by
+# 'vcvarsall.bat'. Always cross-compile from x86 to work with the
+# lighter-weight MSVC installs that do not include native 64-bit tools.
+PLAT_TO_VCVARS = {
+    'win32' : 'x86',
+    'win-amd64' : 'x86_amd64',
+    'win-arm32' : 'x86_arm',
+    'win-arm64' : 'x86_arm64'
+}
+
+class MSVCCompiler(CCompiler) :
+    """Concrete class that implements an interface to Microsoft Visual C++,
+       as defined by the CCompiler abstract class."""
+
+    compiler_type = 'msvc'
+
+    # Just set this so CCompiler's constructor doesn't barf.  We currently
+    # don't use the 'set_executables()' bureaucracy provided by CCompiler,
+    # as it really isn't necessary for this sort of single-compiler class.
+    # Would be nice to have a consistent interface with UnixCCompiler,
+    # though, so it's worth thinking about.
+    executables = {}
+
+    # Private class data (need to distinguish C from C++ source for compiler)
+    _c_extensions = ['.c']
+    _cpp_extensions = ['.cc', '.cpp', '.cxx']
+    _rc_extensions = ['.rc']
+    _mc_extensions = ['.mc']
+
+    # Needed for the filename generation methods provided by the
+    # base class, CCompiler.
+    src_extensions = (_c_extensions + _cpp_extensions +
+                      _rc_extensions + _mc_extensions)
+    res_extension = '.res'
+    obj_extension = '.obj'
+    static_lib_extension = '.lib'
+    shared_lib_extension = '.dll'
+    static_lib_format = shared_lib_format = '%s%s'
+    exe_extension = '.exe'
+
+
+    def __init__(self, verbose=0, dry_run=0, force=0):
+        CCompiler.__init__ (self, verbose, dry_run, force)
+        # target platform (.plat_name is consistent with 'bdist')
+        self.plat_name = None
+        self.initialized = False
+
+    def initialize(self, plat_name=None):
+        # multi-init means we would need to check platform same each time...
+        assert not self.initialized, "don't init multiple times"
+        if plat_name is None:
+            plat_name = get_platform()
+        # sanity check for platforms to prevent obscure errors later.
+        if plat_name not in PLAT_TO_VCVARS:
+            raise DistutilsPlatformError("--plat-name must be one of {}"
+                                         .format(tuple(PLAT_TO_VCVARS)))
+
+        # Get the vcvarsall.bat spec for the requested platform.
+        plat_spec = PLAT_TO_VCVARS[plat_name]
+
+        vc_env = _get_vc_env(plat_spec)
+        if not vc_env:
+            raise DistutilsPlatformError("Unable to find a compatible "
+                "Visual Studio installation.")
+
+        self._paths = vc_env.get('path', '')
+        paths = self._paths.split(os.pathsep)
+        self.cc = _find_exe("cl.exe", paths)
+        self.linker = _find_exe("link.exe", paths)
+        self.lib = _find_exe("lib.exe", paths)
+        self.rc = _find_exe("rc.exe", paths)   # resource compiler
+        self.mc = _find_exe("mc.exe", paths)   # message compiler
+        self.mt = _find_exe("mt.exe", paths)   # message compiler
+
+        for dir in vc_env.get('include', '').split(os.pathsep):
+            if dir:
+                self.add_include_dir(dir.rstrip(os.sep))
+
+        for dir in vc_env.get('lib', '').split(os.pathsep):
+            if dir:
+                self.add_library_dir(dir.rstrip(os.sep))
+
+        self.preprocess_options = None
+        # bpo-38597: Always compile with dynamic linking
+        # Future releases of Python 3.x will include all past
+        # versions of vcruntime*.dll for compatibility.
+        self.compile_options = [
+            '/nologo', '/O2', '/W3', '/GL', '/DNDEBUG', '/MD'
+        ]
+
+        self.compile_options_debug = [
+            '/nologo', '/Od', '/MDd', '/Zi', '/W3', '/D_DEBUG'
+        ]
+
+        ldflags = [
+            '/nologo', '/INCREMENTAL:NO', '/LTCG'
+        ]
+
+        ldflags_debug = [
+            '/nologo', '/INCREMENTAL:NO', '/LTCG', '/DEBUG:FULL'
+        ]
+
+        self.ldflags_exe = [*ldflags, '/MANIFEST:EMBED,ID=1']
+        self.ldflags_exe_debug = [*ldflags_debug, '/MANIFEST:EMBED,ID=1']
+        self.ldflags_shared = [*ldflags, '/DLL', '/MANIFEST:EMBED,ID=2', '/MANIFESTUAC:NO']
+        self.ldflags_shared_debug = [*ldflags_debug, '/DLL', '/MANIFEST:EMBED,ID=2', '/MANIFESTUAC:NO']
+        self.ldflags_static = [*ldflags]
+        self.ldflags_static_debug = [*ldflags_debug]
+
+        self._ldflags = {
+            (CCompiler.EXECUTABLE, None): self.ldflags_exe,
+            (CCompiler.EXECUTABLE, False): self.ldflags_exe,
+            (CCompiler.EXECUTABLE, True): self.ldflags_exe_debug,
+            (CCompiler.SHARED_OBJECT, None): self.ldflags_shared,
+            (CCompiler.SHARED_OBJECT, False): self.ldflags_shared,
+            (CCompiler.SHARED_OBJECT, True): self.ldflags_shared_debug,
+            (CCompiler.SHARED_LIBRARY, None): self.ldflags_static,
+            (CCompiler.SHARED_LIBRARY, False): self.ldflags_static,
+            (CCompiler.SHARED_LIBRARY, True): self.ldflags_static_debug,
+        }
+
+        self.initialized = True
+
+    # -- Worker methods ------------------------------------------------
+
+    def object_filenames(self,
+                         source_filenames,
+                         strip_dir=0,
+                         output_dir=''):
+        ext_map = {
+            **{ext: self.obj_extension for ext in self.src_extensions},
+            **{ext: self.res_extension for ext in self._rc_extensions + self._mc_extensions},
+        }
+
+        output_dir = output_dir or ''
+
+        def make_out_path(p):
+            base, ext = os.path.splitext(p)
+            if strip_dir:
+                base = os.path.basename(base)
+            else:
+                _, base = os.path.splitdrive(base)
+                if base.startswith((os.path.sep, os.path.altsep)):
+                    base = base[1:]
+            try:
+                # XXX: This may produce absurdly long paths. We should check
+                # the length of the result and trim base until we fit within
+                # 260 characters.
+                return os.path.join(output_dir, base + ext_map[ext])
+            except LookupError:
+                # Better to raise an exception instead of silently continuing
+                # and later complain about sources and targets having
+                # different lengths
+                raise CompileError("Don't know how to compile {}".format(p))
+
+        return list(map(make_out_path, source_filenames))
+
+
+    def compile(self, sources,
+                output_dir=None, macros=None, include_dirs=None, debug=0,
+                extra_preargs=None, extra_postargs=None, depends=None):
+
+        if not self.initialized:
+            self.initialize()
+        compile_info = self._setup_compile(output_dir, macros, include_dirs,
+                                           sources, depends, extra_postargs)
+        macros, objects, extra_postargs, pp_opts, build = compile_info
+
+        compile_opts = extra_preargs or []
+        compile_opts.append('/c')
+        if debug:
+            compile_opts.extend(self.compile_options_debug)
+        else:
+            compile_opts.extend(self.compile_options)
+
+
+        add_cpp_opts = False
+
+        for obj in objects:
+            try:
+                src, ext = build[obj]
+            except KeyError:
+                continue
+            if debug:
+                # pass the full pathname to MSVC in debug mode,
+                # this allows the debugger to find the source file
+                # without asking the user to browse for it
+                src = os.path.abspath(src)
+
+            if ext in self._c_extensions:
+                input_opt = "/Tc" + src
+            elif ext in self._cpp_extensions:
+                input_opt = "/Tp" + src
+                add_cpp_opts = True
+            elif ext in self._rc_extensions:
+                # compile .RC to .RES file
+                input_opt = src
+                output_opt = "/fo" + obj
+                try:
+                    self.spawn([self.rc] + pp_opts + [output_opt, input_opt])
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue
+            elif ext in self._mc_extensions:
+                # Compile .MC to .RC file to .RES file.
+                #   * '-h dir' specifies the directory for the
+                #     generated include file
+                #   * '-r dir' specifies the target directory of the
+                #     generated RC file and the binary message resource
+                #     it includes
+                #
+                # For now (since there are no options to change this),
+                # we use the source-directory for the include file and
+                # the build directory for the RC file and message
+                # resources. This works at least for win32all.
+                h_dir = os.path.dirname(src)
+                rc_dir = os.path.dirname(obj)
+                try:
+                    # first compile .MC to .RC and .H file
+                    self.spawn([self.mc, '-h', h_dir, '-r', rc_dir, src])
+                    base, _ = os.path.splitext(os.path.basename (src))
+                    rc_file = os.path.join(rc_dir, base + '.rc')
+                    # then compile .RC to .RES file
+                    self.spawn([self.rc, "/fo" + obj, rc_file])
+
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue
+            else:
+                # how to handle this file?
+                raise CompileError("Don't know how to compile {} to {}"
+                                   .format(src, obj))
+
+            args = [self.cc] + compile_opts + pp_opts
+            if add_cpp_opts:
+                args.append('/EHsc')
+            args.append(input_opt)
+            args.append("/Fo" + obj)
+            args.extend(extra_postargs)
+
+            try:
+                self.spawn(args)
+            except DistutilsExecError as msg:
+                raise CompileError(msg)
+
+        return objects
+
+
+    def create_static_lib(self,
+                          objects,
+                          output_libname,
+                          output_dir=None,
+                          debug=0,
+                          target_lang=None):
+
+        if not self.initialized:
+            self.initialize()
+        objects, output_dir = self._fix_object_args(objects, output_dir)
+        output_filename = self.library_filename(output_libname,
+                                                output_dir=output_dir)
+
+        if self._need_link(objects, output_filename):
+            lib_args = objects + ['/OUT:' + output_filename]
+            if debug:
+                pass # XXX what goes here?
+            try:
+                log.debug('Executing "%s" %s', self.lib, ' '.join(lib_args))
+                self.spawn([self.lib] + lib_args)
+            except DistutilsExecError as msg:
+                raise LibError(msg)
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+
+    def link(self,
+             target_desc,
+             objects,
+             output_filename,
+             output_dir=None,
+             libraries=None,
+             library_dirs=None,
+             runtime_library_dirs=None,
+             export_symbols=None,
+             debug=0,
+             extra_preargs=None,
+             extra_postargs=None,
+             build_temp=None,
+             target_lang=None):
+
+        if not self.initialized:
+            self.initialize()
+        objects, output_dir = self._fix_object_args(objects, output_dir)
+        fixed_args = self._fix_lib_args(libraries, library_dirs,
+                                        runtime_library_dirs)
+        libraries, library_dirs, runtime_library_dirs = fixed_args
+
+        if runtime_library_dirs:
+            self.warn("I don't know what to do with 'runtime_library_dirs': "
+                       + str(runtime_library_dirs))
+
+        lib_opts = gen_lib_options(self,
+                                   library_dirs, runtime_library_dirs,
+                                   libraries)
+        if output_dir is not None:
+            output_filename = os.path.join(output_dir, output_filename)
+
+        if self._need_link(objects, output_filename):
+            ldflags = self._ldflags[target_desc, debug]
+
+            export_opts = ["/EXPORT:" + sym for sym in (export_symbols or [])]
+
+            ld_args = (ldflags + lib_opts + export_opts +
+                       objects + ['/OUT:' + output_filename])
+
+            # The MSVC linker generates .lib and .exp files, which cannot be
+            # suppressed by any linker switches. The .lib files may even be
+            # needed! Make sure they are generated in the temporary build
+            # directory. Since they have different names for debug and release
+            # builds, they can go into the same directory.
+            build_temp = os.path.dirname(objects[0])
+            if export_symbols is not None:
+                (dll_name, dll_ext) = os.path.splitext(
+                    os.path.basename(output_filename))
+                implib_file = os.path.join(
+                    build_temp,
+                    self.library_filename(dll_name))
+                ld_args.append ('/IMPLIB:' + implib_file)
+
+            if extra_preargs:
+                ld_args[:0] = extra_preargs
+            if extra_postargs:
+                ld_args.extend(extra_postargs)
+
+            output_dir = os.path.dirname(os.path.abspath(output_filename))
+            self.mkpath(output_dir)
+            try:
+                log.debug('Executing "%s" %s', self.linker, ' '.join(ld_args))
+                self.spawn([self.linker] + ld_args)
+            except DistutilsExecError as msg:
+                raise LinkError(msg)
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+    def spawn(self, cmd):
+        env = dict(os.environ, PATH=self._paths)
+        with self._fallback_spawn(cmd, env) as fallback:
+            return super().spawn(cmd, env=env)
+        return fallback.value
+
+    @contextlib.contextmanager
+    def _fallback_spawn(self, cmd, env):
+        """
+        Discovered in pypa/distutils#15, some tools monkeypatch the compiler,
+        so the 'env' kwarg causes a TypeError. Detect this condition and
+        restore the legacy, unsafe behavior.
+        """
+        bag = type('Bag', (), {})()
+        try:
+            yield bag
+        except TypeError as exc:
+            if "unexpected keyword argument 'env'" not in str(exc):
+                raise
+        else:
+            return
+        warnings.warn(
+            "Fallback spawn triggered. Please update distutils monkeypatch.")
+        with unittest.mock.patch('os.environ', env):
+            bag.value = super().spawn(cmd)
+
+    # -- Miscellaneous methods -----------------------------------------
+    # These are all used by the 'gen_lib_options() function, in
+    # ccompiler.py.
+
+    def library_dir_option(self, dir):
+        return "/LIBPATH:" + dir
+
+    def runtime_library_dir_option(self, dir):
+        raise DistutilsPlatformError(
+              "don't know how to set runtime library search path for MSVC")
+
+    def library_option(self, lib):
+        return self.library_filename(lib)
+
+    def find_library_file(self, dirs, lib, debug=0):
+        # Prefer a debugging library if found (and requested), but deal
+        # with it if we don't have one.
+        if debug:
+            try_names = [lib + "_d", lib]
+        else:
+            try_names = [lib]
+        for dir in dirs:
+            for name in try_names:
+                libfile = os.path.join(dir, self.library_filename(name))
+                if os.path.isfile(libfile):
+                    return libfile
+        else:
+            # Oops, didn't find it in *any* of 'dirs'
+            return None

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/archive_util.py

@@ -0,0 +1,256 @@
+"""distutils.archive_util
+
+Utility functions for creating archive files (tarballs, zip files,
+that sort of thing)."""
+
+import os
+from warnings import warn
+import sys
+
+try:
+    import zipfile
+except ImportError:
+    zipfile = None
+
+
+from distutils.errors import DistutilsExecError
+from distutils.spawn import spawn
+from distutils.dir_util import mkpath
+from distutils import log
+
+try:
+    from pwd import getpwnam
+except ImportError:
+    getpwnam = None
+
+try:
+    from grp import getgrnam
+except ImportError:
+    getgrnam = None
+
+def _get_gid(name):
+    """Returns a gid, given a group name."""
+    if getgrnam is None or name is None:
+        return None
+    try:
+        result = getgrnam(name)
+    except KeyError:
+        result = None
+    if result is not None:
+        return result[2]
+    return None
+
+def _get_uid(name):
+    """Returns an uid, given a user name."""
+    if getpwnam is None or name is None:
+        return None
+    try:
+        result = getpwnam(name)
+    except KeyError:
+        result = None
+    if result is not None:
+        return result[2]
+    return None
+
+def make_tarball(base_name, base_dir, compress="gzip", verbose=0, dry_run=0,
+                 owner=None, group=None):
+    """Create a (possibly compressed) tar file from all the files under
+    'base_dir'.
+
+    'compress' must be "gzip" (the default), "bzip2", "xz", "compress", or
+    None.  ("compress" will be deprecated in Python 3.2)
+
+    'owner' and 'group' can be used to define an owner and a group for the
+    archive that is being built. If not provided, the current owner and group
+    will be used.
+
+    The output tar file will be named 'base_dir' +  ".tar", possibly plus
+    the appropriate compression extension (".gz", ".bz2", ".xz" or ".Z").
+
+    Returns the output filename.
+    """
+    tar_compression = {'gzip': 'gz', 'bzip2': 'bz2', 'xz': 'xz', None: '',
+                       'compress': ''}
+    compress_ext = {'gzip': '.gz', 'bzip2': '.bz2', 'xz': '.xz',
+                    'compress': '.Z'}
+
+    # flags for compression program, each element of list will be an argument
+    if compress is not None and compress not in compress_ext.keys():
+        raise ValueError(
+              "bad value for 'compress': must be None, 'gzip', 'bzip2', "
+              "'xz' or 'compress'")
+
+    archive_name = base_name + '.tar'
+    if compress != 'compress':
+        archive_name += compress_ext.get(compress, '')
+
+    mkpath(os.path.dirname(archive_name), dry_run=dry_run)
+
+    # creating the tarball
+    import tarfile  # late import so Python build itself doesn't break
+
+    log.info('Creating tar archive')
+
+    uid = _get_uid(owner)
+    gid = _get_gid(group)
+
+    def _set_uid_gid(tarinfo):
+        if gid is not None:
+            tarinfo.gid = gid
+            tarinfo.gname = group
+        if uid is not None:
+            tarinfo.uid = uid
+            tarinfo.uname = owner
+        return tarinfo
+
+    if not dry_run:
+        tar = tarfile.open(archive_name, 'w|%s' % tar_compression[compress])
+        try:
+            tar.add(base_dir, filter=_set_uid_gid)
+        finally:
+            tar.close()
+
+    # compression using `compress`
+    if compress == 'compress':
+        warn("'compress' will be deprecated.", PendingDeprecationWarning)
+        # the option varies depending on the platform
+        compressed_name = archive_name + compress_ext[compress]
+        if sys.platform == 'win32':
+            cmd = [compress, archive_name, compressed_name]
+        else:
+            cmd = [compress, '-f', archive_name]
+        spawn(cmd, dry_run=dry_run)
+        return compressed_name
+
+    return archive_name
+
+def make_zipfile(base_name, base_dir, verbose=0, dry_run=0):
+    """Create a zip file from all the files under 'base_dir'.
+
+    The output zip file will be named 'base_name' + ".zip".  Uses either the
+    "zipfile" Python module (if available) or the InfoZIP "zip" utility
+    (if installed and found on the default search path).  If neither tool is
+    available, raises DistutilsExecError.  Returns the name of the output zip
+    file.
+    """
+    zip_filename = base_name + ".zip"
+    mkpath(os.path.dirname(zip_filename), dry_run=dry_run)
+
+    # If zipfile module is not available, try spawning an external
+    # 'zip' command.
+    if zipfile is None:
+        if verbose:
+            zipoptions = "-r"
+        else:
+            zipoptions = "-rq"
+
+        try:
+            spawn(["zip", zipoptions, zip_filename, base_dir],
+                  dry_run=dry_run)
+        except DistutilsExecError:
+            # XXX really should distinguish between "couldn't find
+            # external 'zip' command" and "zip failed".
+            raise DistutilsExecError(("unable to create zip file '%s': "
+                   "could neither import the 'zipfile' module nor "
+                   "find a standalone zip utility") % zip_filename)
+
+    else:
+        log.info("creating '%s' and adding '%s' to it",
+                 zip_filename, base_dir)
+
+        if not dry_run:
+            try:
+                zip = zipfile.ZipFile(zip_filename, "w",
+                                      compression=zipfile.ZIP_DEFLATED)
+            except RuntimeError:
+                zip = zipfile.ZipFile(zip_filename, "w",
+                                      compression=zipfile.ZIP_STORED)
+
+            with zip:
+                if base_dir != os.curdir:
+                    path = os.path.normpath(os.path.join(base_dir, ''))
+                    zip.write(path, path)
+                    log.info("adding '%s'", path)
+                for dirpath, dirnames, filenames in os.walk(base_dir):
+                    for name in dirnames:
+                        path = os.path.normpath(os.path.join(dirpath, name, ''))
+                        zip.write(path, path)
+                        log.info("adding '%s'", path)
+                    for name in filenames:
+                        path = os.path.normpath(os.path.join(dirpath, name))
+                        if os.path.isfile(path):
+                            zip.write(path, path)
+                            log.info("adding '%s'", path)
+
+    return zip_filename
+
+ARCHIVE_FORMATS = {
+    'gztar': (make_tarball, [('compress', 'gzip')], "gzip'ed tar-file"),
+    'bztar': (make_tarball, [('compress', 'bzip2')], "bzip2'ed tar-file"),
+    'xztar': (make_tarball, [('compress', 'xz')], "xz'ed tar-file"),
+    'ztar':  (make_tarball, [('compress', 'compress')], "compressed tar file"),
+    'tar':   (make_tarball, [('compress', None)], "uncompressed tar file"),
+    'zip':   (make_zipfile, [],"ZIP file")
+    }
+
+def check_archive_formats(formats):
+    """Returns the first format from the 'format' list that is unknown.
+
+    If all formats are known, returns None
+    """
+    for format in formats:
+        if format not in ARCHIVE_FORMATS:
+            return format
+    return None
+
+def make_archive(base_name, format, root_dir=None, base_dir=None, verbose=0,
+                 dry_run=0, owner=None, group=None):
+    """Create an archive file (eg. zip or tar).
+
+    'base_name' is the name of the file to create, minus any format-specific
+    extension; 'format' is the archive format: one of "zip", "tar", "gztar",
+    "bztar", "xztar", or "ztar".
+
+    'root_dir' is a directory that will be the root directory of the
+    archive; ie. we typically chdir into 'root_dir' before creating the
+    archive.  'base_dir' is the directory where we start archiving from;
+    ie. 'base_dir' will be the common prefix of all files and
+    directories in the archive.  'root_dir' and 'base_dir' both default
+    to the current directory.  Returns the name of the archive file.
+
+    'owner' and 'group' are used when creating a tar archive. By default,
+    uses the current owner and group.
+    """
+    save_cwd = os.getcwd()
+    if root_dir is not None:
+        log.debug("changing into '%s'", root_dir)
+        base_name = os.path.abspath(base_name)
+        if not dry_run:
+            os.chdir(root_dir)
+
+    if base_dir is None:
+        base_dir = os.curdir
+
+    kwargs = {'dry_run': dry_run}
+
+    try:
+        format_info = ARCHIVE_FORMATS[format]
+    except KeyError:
+        raise ValueError("unknown archive format '%s'" % format)
+
+    func = format_info[0]
+    for arg, val in format_info[1]:
+        kwargs[arg] = val
+
+    if format != 'zip':
+        kwargs['owner'] = owner
+        kwargs['group'] = group
+
+    try:
+        filename = func(base_name, base_dir, **kwargs)
+    finally:
+        if root_dir is not None:
+            log.debug("changing back to '%s'", save_cwd)
+            os.chdir(save_cwd)
+
+    return filename

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/bcppcompiler.py

@@ -0,0 +1,393 @@
+"""distutils.bcppcompiler
+
+Contains BorlandCCompiler, an implementation of the abstract CCompiler class
+for the Borland C++ compiler.
+"""
+
+# This implementation by Lyle Johnson, based on the original msvccompiler.py
+# module and using the directions originally published by Gordon Williams.
+
+# XXX looks like there's a LOT of overlap between these two classes:
+# someone should sit down and factor out the common code as
+# WindowsCCompiler!  --GPW
+
+
+import os
+from distutils.errors import \
+     DistutilsExecError, \
+     CompileError, LibError, LinkError, UnknownFileError
+from distutils.ccompiler import \
+     CCompiler, gen_preprocess_options
+from distutils.file_util import write_file
+from distutils.dep_util import newer
+from distutils import log
+
+class BCPPCompiler(CCompiler) :
+    """Concrete class that implements an interface to the Borland C/C++
+    compiler, as defined by the CCompiler abstract class.
+    """
+
+    compiler_type = 'bcpp'
+
+    # Just set this so CCompiler's constructor doesn't barf.  We currently
+    # don't use the 'set_executables()' bureaucracy provided by CCompiler,
+    # as it really isn't necessary for this sort of single-compiler class.
+    # Would be nice to have a consistent interface with UnixCCompiler,
+    # though, so it's worth thinking about.
+    executables = {}
+
+    # Private class data (need to distinguish C from C++ source for compiler)
+    _c_extensions = ['.c']
+    _cpp_extensions = ['.cc', '.cpp', '.cxx']
+
+    # Needed for the filename generation methods provided by the
+    # base class, CCompiler.
+    src_extensions = _c_extensions + _cpp_extensions
+    obj_extension = '.obj'
+    static_lib_extension = '.lib'
+    shared_lib_extension = '.dll'
+    static_lib_format = shared_lib_format = '%s%s'
+    exe_extension = '.exe'
+
+
+    def __init__ (self,
+                  verbose=0,
+                  dry_run=0,
+                  force=0):
+
+        CCompiler.__init__ (self, verbose, dry_run, force)
+
+        # These executables are assumed to all be in the path.
+        # Borland doesn't seem to use any special registry settings to
+        # indicate their installation locations.
+
+        self.cc = "bcc32.exe"
+        self.linker = "ilink32.exe"
+        self.lib = "tlib.exe"
+
+        self.preprocess_options = None
+        self.compile_options = ['/tWM', '/O2', '/q', '/g0']
+        self.compile_options_debug = ['/tWM', '/Od', '/q', '/g0']
+
+        self.ldflags_shared = ['/Tpd', '/Gn', '/q', '/x']
+        self.ldflags_shared_debug = ['/Tpd', '/Gn', '/q', '/x']
+        self.ldflags_static = []
+        self.ldflags_exe = ['/Gn', '/q', '/x']
+        self.ldflags_exe_debug = ['/Gn', '/q', '/x','/r']
+
+
+    # -- Worker methods ------------------------------------------------
+
+    def compile(self, sources,
+                output_dir=None, macros=None, include_dirs=None, debug=0,
+                extra_preargs=None, extra_postargs=None, depends=None):
+
+        macros, objects, extra_postargs, pp_opts, build = \
+                self._setup_compile(output_dir, macros, include_dirs, sources,
+                                    depends, extra_postargs)
+        compile_opts = extra_preargs or []
+        compile_opts.append ('-c')
+        if debug:
+            compile_opts.extend (self.compile_options_debug)
+        else:
+            compile_opts.extend (self.compile_options)
+
+        for obj in objects:
+            try:
+                src, ext = build[obj]
+            except KeyError:
+                continue
+            # XXX why do the normpath here?
+            src = os.path.normpath(src)
+            obj = os.path.normpath(obj)
+            # XXX _setup_compile() did a mkpath() too but before the normpath.
+            # Is it possible to skip the normpath?
+            self.mkpath(os.path.dirname(obj))
+
+            if ext == '.res':
+                # This is already a binary file -- skip it.
+                continue # the 'for' loop
+            if ext == '.rc':
+                # This needs to be compiled to a .res file -- do it now.
+                try:
+                    self.spawn (["brcc32", "-fo", obj, src])
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue # the 'for' loop
+
+            # The next two are both for the real compiler.
+            if ext in self._c_extensions:
+                input_opt = ""
+            elif ext in self._cpp_extensions:
+                input_opt = "-P"
+            else:
+                # Unknown file type -- no extra options.  The compiler
+                # will probably fail, but let it just in case this is a
+                # file the compiler recognizes even if we don't.
+                input_opt = ""
+
+            output_opt = "-o" + obj
+
+            # Compiler command line syntax is: "bcc32 [options] file(s)".
+            # Note that the source file names must appear at the end of
+            # the command line.
+            try:
+                self.spawn ([self.cc] + compile_opts + pp_opts +
+                            [input_opt, output_opt] +
+                            extra_postargs + [src])
+            except DistutilsExecError as msg:
+                raise CompileError(msg)
+
+        return objects
+
+    # compile ()
+
+
+    def create_static_lib (self,
+                           objects,
+                           output_libname,
+                           output_dir=None,
+                           debug=0,
+                           target_lang=None):
+
+        (objects, output_dir) = self._fix_object_args (objects, output_dir)
+        output_filename = \
+            self.library_filename (output_libname, output_dir=output_dir)
+
+        if self._need_link (objects, output_filename):
+            lib_args = [output_filename, '/u'] + objects
+            if debug:
+                pass                    # XXX what goes here?
+            try:
+                self.spawn ([self.lib] + lib_args)
+            except DistutilsExecError as msg:
+                raise LibError(msg)
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+    # create_static_lib ()
+
+
+    def link (self,
+              target_desc,
+              objects,
+              output_filename,
+              output_dir=None,
+              libraries=None,
+              library_dirs=None,
+              runtime_library_dirs=None,
+              export_symbols=None,
+              debug=0,
+              extra_preargs=None,
+              extra_postargs=None,
+              build_temp=None,
+              target_lang=None):
+
+        # XXX this ignores 'build_temp'!  should follow the lead of
+        # msvccompiler.py
+
+        (objects, output_dir) = self._fix_object_args (objects, output_dir)
+        (libraries, library_dirs, runtime_library_dirs) = \
+            self._fix_lib_args (libraries, library_dirs, runtime_library_dirs)
+
+        if runtime_library_dirs:
+            log.warn("I don't know what to do with 'runtime_library_dirs': %s",
+                     str(runtime_library_dirs))
+
+        if output_dir is not None:
+            output_filename = os.path.join (output_dir, output_filename)
+
+        if self._need_link (objects, output_filename):
+
+            # Figure out linker args based on type of target.
+            if target_desc == CCompiler.EXECUTABLE:
+                startup_obj = 'c0w32'
+                if debug:
+                    ld_args = self.ldflags_exe_debug[:]
+                else:
+                    ld_args = self.ldflags_exe[:]
+            else:
+                startup_obj = 'c0d32'
+                if debug:
+                    ld_args = self.ldflags_shared_debug[:]
+                else:
+                    ld_args = self.ldflags_shared[:]
+
+
+            # Create a temporary exports file for use by the linker
+            if export_symbols is None:
+                def_file = ''
+            else:
+                head, tail = os.path.split (output_filename)
+                modname, ext = os.path.splitext (tail)
+                temp_dir = os.path.dirname(objects[0]) # preserve tree structure
+                def_file = os.path.join (temp_dir, '%s.def' % modname)
+                contents = ['EXPORTS']
+                for sym in (export_symbols or []):
+                    contents.append('  %s=_%s' % (sym, sym))
+                self.execute(write_file, (def_file, contents),
+                             "writing %s" % def_file)
+
+            # Borland C++ has problems with '/' in paths
+            objects2 = map(os.path.normpath, objects)
+            # split objects in .obj and .res files
+            # Borland C++ needs them at different positions in the command line
+            objects = [startup_obj]
+            resources = []
+            for file in objects2:
+                (base, ext) = os.path.splitext(os.path.normcase(file))
+                if ext == '.res':
+                    resources.append(file)
+                else:
+                    objects.append(file)
+
+
+            for l in library_dirs:
+                ld_args.append("/L%s" % os.path.normpath(l))
+            ld_args.append("/L.") # we sometimes use relative paths
+
+            # list of object files
+            ld_args.extend(objects)
+
+            # XXX the command-line syntax for Borland C++ is a bit wonky;
+            # certain filenames are jammed together in one big string, but
+            # comma-delimited.  This doesn't mesh too well with the
+            # Unix-centric attitude (with a DOS/Windows quoting hack) of
+            # 'spawn()', so constructing the argument list is a bit
+            # awkward.  Note that doing the obvious thing and jamming all
+            # the filenames and commas into one argument would be wrong,
+            # because 'spawn()' would quote any filenames with spaces in
+            # them.  Arghghh!.  Apparently it works fine as coded...
+
+            # name of dll/exe file
+            ld_args.extend([',',output_filename])
+            # no map file and start libraries
+            ld_args.append(',,')
+
+            for lib in libraries:
+                # see if we find it and if there is a bcpp specific lib
+                # (xxx_bcpp.lib)
+                libfile = self.find_library_file(library_dirs, lib, debug)
+                if libfile is None:
+                    ld_args.append(lib)
+                    # probably a BCPP internal library -- don't warn
+                else:
+                    # full name which prefers bcpp_xxx.lib over xxx.lib
+                    ld_args.append(libfile)
+
+            # some default libraries
+            ld_args.append ('import32')
+            ld_args.append ('cw32mt')
+
+            # def file for export symbols
+            ld_args.extend([',',def_file])
+            # add resource files
+            ld_args.append(',')
+            ld_args.extend(resources)
+
+
+            if extra_preargs:
+                ld_args[:0] = extra_preargs
+            if extra_postargs:
+                ld_args.extend(extra_postargs)
+
+            self.mkpath (os.path.dirname (output_filename))
+            try:
+                self.spawn ([self.linker] + ld_args)
+            except DistutilsExecError as msg:
+                raise LinkError(msg)
+
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+    # link ()
+
+    # -- Miscellaneous methods -----------------------------------------
+
+
+    def find_library_file (self, dirs, lib, debug=0):
+        # List of effective library names to try, in order of preference:
+        # xxx_bcpp.lib is better than xxx.lib
+        # and xxx_d.lib is better than xxx.lib if debug is set
+        #
+        # The "_bcpp" suffix is to handle a Python installation for people
+        # with multiple compilers (primarily Distutils hackers, I suspect
+        # ;-).  The idea is they'd have one static library for each
+        # compiler they care about, since (almost?) every Windows compiler
+        # seems to have a different format for static libraries.
+        if debug:
+            dlib = (lib + "_d")
+            try_names = (dlib + "_bcpp", lib + "_bcpp", dlib, lib)
+        else:
+            try_names = (lib + "_bcpp", lib)
+
+        for dir in dirs:
+            for name in try_names:
+                libfile = os.path.join(dir, self.library_filename(name))
+                if os.path.exists(libfile):
+                    return libfile
+        else:
+            # Oops, didn't find it in *any* of 'dirs'
+            return None
+
+    # overwrite the one from CCompiler to support rc and res-files
+    def object_filenames (self,
+                          source_filenames,
+                          strip_dir=0,
+                          output_dir=''):
+        if output_dir is None: output_dir = ''
+        obj_names = []
+        for src_name in source_filenames:
+            # use normcase to make sure '.rc' is really '.rc' and not '.RC'
+            (base, ext) = os.path.splitext (os.path.normcase(src_name))
+            if ext not in (self.src_extensions + ['.rc','.res']):
+                raise UnknownFileError("unknown file type '%s' (from '%s')" % \
+                      (ext, src_name))
+            if strip_dir:
+                base = os.path.basename (base)
+            if ext == '.res':
+                # these can go unchanged
+                obj_names.append (os.path.join (output_dir, base + ext))
+            elif ext == '.rc':
+                # these need to be compiled to .res-files
+                obj_names.append (os.path.join (output_dir, base + '.res'))
+            else:
+                obj_names.append (os.path.join (output_dir,
+                                            base + self.obj_extension))
+        return obj_names
+
+    # object_filenames ()
+
+    def preprocess (self,
+                    source,
+                    output_file=None,
+                    macros=None,
+                    include_dirs=None,
+                    extra_preargs=None,
+                    extra_postargs=None):
+
+        (_, macros, include_dirs) = \
+            self._fix_compile_args(None, macros, include_dirs)
+        pp_opts = gen_preprocess_options(macros, include_dirs)
+        pp_args = ['cpp32.exe'] + pp_opts
+        if output_file is not None:
+            pp_args.append('-o' + output_file)
+        if extra_preargs:
+            pp_args[:0] = extra_preargs
+        if extra_postargs:
+            pp_args.extend(extra_postargs)
+        pp_args.append(source)
+
+        # We need to preprocess: either we're being forced to, or the
+        # source file is newer than the target (or the target doesn't
+        # exist).
+        if self.force or output_file is None or newer(source, output_file):
+            if output_file:
+                self.mkpath(os.path.dirname(output_file))
+            try:
+                self.spawn(pp_args)
+            except DistutilsExecError as msg:
+                print(msg)
+                raise CompileError(msg)
+
+    # preprocess()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/cmd.py

@@ -0,0 +1,403 @@
+"""distutils.cmd
+
+Provides the Command class, the base class for the command classes
+in the distutils.command package.
+"""
+
+import sys, os, re
+from distutils.errors import DistutilsOptionError
+from distutils import util, dir_util, file_util, archive_util, dep_util
+from distutils import log
+
+class Command:
+    """Abstract base class for defining command classes, the "worker bees"
+    of the Distutils.  A useful analogy for command classes is to think of
+    them as subroutines with local variables called "options".  The options
+    are "declared" in 'initialize_options()' and "defined" (given their
+    final values, aka "finalized") in 'finalize_options()', both of which
+    must be defined by every command class.  The distinction between the
+    two is necessary because option values might come from the outside
+    world (command line, config file, ...), and any options dependent on
+    other options must be computed *after* these outside influences have
+    been processed -- hence 'finalize_options()'.  The "body" of the
+    subroutine, where it does all its work based on the values of its
+    options, is the 'run()' method, which must also be implemented by every
+    command class.
+    """
+
+    # 'sub_commands' formalizes the notion of a "family" of commands,
+    # eg. "install" as the parent with sub-commands "install_lib",
+    # "install_headers", etc.  The parent of a family of commands
+    # defines 'sub_commands' as a class attribute; it's a list of
+    #    (command_name : string, predicate : unbound_method | string | None)
+    # tuples, where 'predicate' is a method of the parent command that
+    # determines whether the corresponding command is applicable in the
+    # current situation.  (Eg. we "install_headers" is only applicable if
+    # we have any C header files to install.)  If 'predicate' is None,
+    # that command is always applicable.
+    #
+    # 'sub_commands' is usually defined at the *end* of a class, because
+    # predicates can be unbound methods, so they must already have been
+    # defined.  The canonical example is the "install" command.
+    sub_commands = []
+
+
+    # -- Creation/initialization methods -------------------------------
+
+    def __init__(self, dist):
+        """Create and initialize a new Command object.  Most importantly,
+        invokes the 'initialize_options()' method, which is the real
+        initializer and depends on the actual command being
+        instantiated.
+        """
+        # late import because of mutual dependence between these classes
+        from distutils.dist import Distribution
+
+        if not isinstance(dist, Distribution):
+            raise TypeError("dist must be a Distribution instance")
+        if self.__class__ is Command:
+            raise RuntimeError("Command is an abstract class")
+
+        self.distribution = dist
+        self.initialize_options()
+
+        # Per-command versions of the global flags, so that the user can
+        # customize Distutils' behaviour command-by-command and let some
+        # commands fall back on the Distribution's behaviour.  None means
+        # "not defined, check self.distribution's copy", while 0 or 1 mean
+        # false and true (duh).  Note that this means figuring out the real
+        # value of each flag is a touch complicated -- hence "self._dry_run"
+        # will be handled by __getattr__, below.
+        # XXX This needs to be fixed.
+        self._dry_run = None
+
+        # verbose is largely ignored, but needs to be set for
+        # backwards compatibility (I think)?
+        self.verbose = dist.verbose
+
+        # Some commands define a 'self.force' option to ignore file
+        # timestamps, but methods defined *here* assume that
+        # 'self.force' exists for all commands.  So define it here
+        # just to be safe.
+        self.force = None
+
+        # The 'help' flag is just used for command-line parsing, so
+        # none of that complicated bureaucracy is needed.
+        self.help = 0
+
+        # 'finalized' records whether or not 'finalize_options()' has been
+        # called.  'finalize_options()' itself should not pay attention to
+        # this flag: it is the business of 'ensure_finalized()', which
+        # always calls 'finalize_options()', to respect/update it.
+        self.finalized = 0
+
+    # XXX A more explicit way to customize dry_run would be better.
+    def __getattr__(self, attr):
+        if attr == 'dry_run':
+            myval = getattr(self, "_" + attr)
+            if myval is None:
+                return getattr(self.distribution, attr)
+            else:
+                return myval
+        else:
+            raise AttributeError(attr)
+
+    def ensure_finalized(self):
+        if not self.finalized:
+            self.finalize_options()
+        self.finalized = 1
+
+    # Subclasses must define:
+    #   initialize_options()
+    #     provide default values for all options; may be customized by
+    #     setup script, by options from config file(s), or by command-line
+    #     options
+    #   finalize_options()
+    #     decide on the final values for all options; this is called
+    #     after all possible intervention from the outside world
+    #     (command-line, option file, etc.) has been processed
+    #   run()
+    #     run the command: do whatever it is we're here to do,
+    #     controlled by the command's various option values
+
+    def initialize_options(self):
+        """Set default values for all the options that this command
+        supports.  Note that these defaults may be overridden by other
+        commands, by the setup script, by config files, or by the
+        command-line.  Thus, this is not the place to code dependencies
+        between options; generally, 'initialize_options()' implementations
+        are just a bunch of "self.foo = None" assignments.
+
+        This method must be implemented by all command classes.
+        """
+        raise RuntimeError("abstract method -- subclass %s must override"
+                           % self.__class__)
+
+    def finalize_options(self):
+        """Set final values for all the options that this command supports.
+        This is always called as late as possible, ie.  after any option
+        assignments from the command-line or from other commands have been
+        done.  Thus, this is the place to code option dependencies: if
+        'foo' depends on 'bar', then it is safe to set 'foo' from 'bar' as
+        long as 'foo' still has the same value it was assigned in
+        'initialize_options()'.
+
+        This method must be implemented by all command classes.
+        """
+        raise RuntimeError("abstract method -- subclass %s must override"
+                           % self.__class__)
+
+
+    def dump_options(self, header=None, indent=""):
+        from distutils.fancy_getopt import longopt_xlate
+        if header is None:
+            header = "command options for '%s':" % self.get_command_name()
+        self.announce(indent + header, level=log.INFO)
+        indent = indent + "  "
+        for (option, _, _) in self.user_options:
+            option = option.translate(longopt_xlate)
+            if option[-1] == "=":
+                option = option[:-1]
+            value = getattr(self, option)
+            self.announce(indent + "%s = %s" % (option, value),
+                          level=log.INFO)
+
+    def run(self):
+        """A command's raison d'etre: carry out the action it exists to
+        perform, controlled by the options initialized in
+        'initialize_options()', customized by other commands, the setup
+        script, the command-line, and config files, and finalized in
+        'finalize_options()'.  All terminal output and filesystem
+        interaction should be done by 'run()'.
+
+        This method must be implemented by all command classes.
+        """
+        raise RuntimeError("abstract method -- subclass %s must override"
+                           % self.__class__)
+
+    def announce(self, msg, level=1):
+        """If the current verbosity level is of greater than or equal to
+        'level' print 'msg' to stdout.
+        """
+        log.log(level, msg)
+
+    def debug_print(self, msg):
+        """Print 'msg' to stdout if the global DEBUG (taken from the
+        DISTUTILS_DEBUG environment variable) flag is true.
+        """
+        from distutils.debug import DEBUG
+        if DEBUG:
+            print(msg)
+            sys.stdout.flush()
+
+
+    # -- Option validation methods -------------------------------------
+    # (these are very handy in writing the 'finalize_options()' method)
+    #
+    # NB. the general philosophy here is to ensure that a particular option
+    # value meets certain type and value constraints.  If not, we try to
+    # force it into conformance (eg. if we expect a list but have a string,
+    # split the string on comma and/or whitespace).  If we can't force the
+    # option into conformance, raise DistutilsOptionError.  Thus, command
+    # classes need do nothing more than (eg.)
+    #   self.ensure_string_list('foo')
+    # and they can be guaranteed that thereafter, self.foo will be
+    # a list of strings.
+
+    def _ensure_stringlike(self, option, what, default=None):
+        val = getattr(self, option)
+        if val is None:
+            setattr(self, option, default)
+            return default
+        elif not isinstance(val, str):
+            raise DistutilsOptionError("'%s' must be a %s (got `%s`)"
+                                       % (option, what, val))
+        return val
+
+    def ensure_string(self, option, default=None):
+        """Ensure that 'option' is a string; if not defined, set it to
+        'default'.
+        """
+        self._ensure_stringlike(option, "string", default)
+
+    def ensure_string_list(self, option):
+        r"""Ensure that 'option' is a list of strings.  If 'option' is
+        currently a string, we split it either on /,\s*/ or /\s+/, so
+        "foo bar baz", "foo,bar,baz", and "foo,   bar baz" all become
+        ["foo", "bar", "baz"].
+        """
+        val = getattr(self, option)
+        if val is None:
+            return
+        elif isinstance(val, str):
+            setattr(self, option, re.split(r',\s*|\s+', val))
+        else:
+            if isinstance(val, list):
+                ok = all(isinstance(v, str) for v in val)
+            else:
+                ok = False
+            if not ok:
+                raise DistutilsOptionError(
+                      "'%s' must be a list of strings (got %r)"
+                      % (option, val))
+
+    def _ensure_tested_string(self, option, tester, what, error_fmt,
+                              default=None):
+        val = self._ensure_stringlike(option, what, default)
+        if val is not None and not tester(val):
+            raise DistutilsOptionError(("error in '%s' option: " + error_fmt)
+                                       % (option, val))
+
+    def ensure_filename(self, option):
+        """Ensure that 'option' is the name of an existing file."""
+        self._ensure_tested_string(option, os.path.isfile,
+                                   "filename",
+                                   "'%s' does not exist or is not a file")
+
+    def ensure_dirname(self, option):
+        self._ensure_tested_string(option, os.path.isdir,
+                                   "directory name",
+                                   "'%s' does not exist or is not a directory")
+
+
+    # -- Convenience methods for commands ------------------------------
+
+    def get_command_name(self):
+        if hasattr(self, 'command_name'):
+            return self.command_name
+        else:
+            return self.__class__.__name__
+
+    def set_undefined_options(self, src_cmd, *option_pairs):
+        """Set the values of any "undefined" options from corresponding
+        option values in some other command object.  "Undefined" here means
+        "is None", which is the convention used to indicate that an option
+        has not been changed between 'initialize_options()' and
+        'finalize_options()'.  Usually called from 'finalize_options()' for
+        options that depend on some other command rather than another
+        option of the same command.  'src_cmd' is the other command from
+        which option values will be taken (a command object will be created
+        for it if necessary); the remaining arguments are
+        '(src_option,dst_option)' tuples which mean "take the value of
+        'src_option' in the 'src_cmd' command object, and copy it to
+        'dst_option' in the current command object".
+        """
+        # Option_pairs: list of (src_option, dst_option) tuples
+        src_cmd_obj = self.distribution.get_command_obj(src_cmd)
+        src_cmd_obj.ensure_finalized()
+        for (src_option, dst_option) in option_pairs:
+            if getattr(self, dst_option) is None:
+                setattr(self, dst_option, getattr(src_cmd_obj, src_option))
+
+    def get_finalized_command(self, command, create=1):
+        """Wrapper around Distribution's 'get_command_obj()' method: find
+        (create if necessary and 'create' is true) the command object for
+        'command', call its 'ensure_finalized()' method, and return the
+        finalized command object.
+        """
+        cmd_obj = self.distribution.get_command_obj(command, create)
+        cmd_obj.ensure_finalized()
+        return cmd_obj
+
+    # XXX rename to 'get_reinitialized_command()'? (should do the
+    # same in dist.py, if so)
+    def reinitialize_command(self, command, reinit_subcommands=0):
+        return self.distribution.reinitialize_command(command,
+                                                      reinit_subcommands)
+
+    def run_command(self, command):
+        """Run some other command: uses the 'run_command()' method of
+        Distribution, which creates and finalizes the command object if
+        necessary and then invokes its 'run()' method.
+        """
+        self.distribution.run_command(command)
+
+    def get_sub_commands(self):
+        """Determine the sub-commands that are relevant in the current
+        distribution (ie., that need to be run).  This is based on the
+        'sub_commands' class attribute: each tuple in that list may include
+        a method that we call to determine if the subcommand needs to be
+        run for the current distribution.  Return a list of command names.
+        """
+        commands = []
+        for (cmd_name, method) in self.sub_commands:
+            if method is None or method(self):
+                commands.append(cmd_name)
+        return commands
+
+
+    # -- External world manipulation -----------------------------------
+
+    def warn(self, msg):
+        log.warn("warning: %s: %s\n", self.get_command_name(), msg)
+
+    def execute(self, func, args, msg=None, level=1):
+        util.execute(func, args, msg, dry_run=self.dry_run)
+
+    def mkpath(self, name, mode=0o777):
+        dir_util.mkpath(name, mode, dry_run=self.dry_run)
+
+    def copy_file(self, infile, outfile, preserve_mode=1, preserve_times=1,
+                  link=None, level=1):
+        """Copy a file respecting verbose, dry-run and force flags.  (The
+        former two default to whatever is in the Distribution object, and
+        the latter defaults to false for commands that don't define it.)"""
+        return file_util.copy_file(infile, outfile, preserve_mode,
+                                   preserve_times, not self.force, link,
+                                   dry_run=self.dry_run)
+
+    def copy_tree(self, infile, outfile, preserve_mode=1, preserve_times=1,
+                   preserve_symlinks=0, level=1):
+        """Copy an entire directory tree respecting verbose, dry-run,
+        and force flags.
+        """
+        return dir_util.copy_tree(infile, outfile, preserve_mode,
+                                  preserve_times, preserve_symlinks,
+                                  not self.force, dry_run=self.dry_run)
+
+    def move_file (self, src, dst, level=1):
+        """Move a file respecting dry-run flag."""
+        return file_util.move_file(src, dst, dry_run=self.dry_run)
+
+    def spawn(self, cmd, search_path=1, level=1):
+        """Spawn an external command respecting dry-run flag."""
+        from distutils.spawn import spawn
+        spawn(cmd, search_path, dry_run=self.dry_run)
+
+    def make_archive(self, base_name, format, root_dir=None, base_dir=None,
+                     owner=None, group=None):
+        return archive_util.make_archive(base_name, format, root_dir, base_dir,
+                                         dry_run=self.dry_run,
+                                         owner=owner, group=group)
+
+    def make_file(self, infiles, outfile, func, args,
+                  exec_msg=None, skip_msg=None, level=1):
+        """Special case of 'execute()' for operations that process one or
+        more input files and generate one output file.  Works just like
+        'execute()', except the operation is skipped and a different
+        message printed if 'outfile' already exists and is newer than all
+        files listed in 'infiles'.  If the command defined 'self.force',
+        and it is true, then the command is unconditionally run -- does no
+        timestamp checks.
+        """
+        if skip_msg is None:
+            skip_msg = "skipping %s (inputs unchanged)" % outfile
+
+        # Allow 'infiles' to be a single string
+        if isinstance(infiles, str):
+            infiles = (infiles,)
+        elif not isinstance(infiles, (list, tuple)):
+            raise TypeError(
+                  "'infiles' must be a string, or a list or tuple of strings")
+
+        if exec_msg is None:
+            exec_msg = "generating %s from %s" % (outfile, ', '.join(infiles))
+
+        # If 'outfile' must be regenerated (either because it doesn't
+        # exist, is out-of-date, or the 'force' flag is true) then
+        # perform the action that presumably regenerates it
+        if self.force or dep_util.newer_group(infiles, outfile):
+            self.execute(func, args, exec_msg, level)
+        # Otherwise, print the "skip" message
+        else:
+            log.debug(skip_msg)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/__init__.py

@@ -0,0 +1,31 @@
+"""distutils.command
+
+Package containing implementation of all the standard Distutils
+commands."""
+
+__all__ = ['build',
+           'build_py',
+           'build_ext',
+           'build_clib',
+           'build_scripts',
+           'clean',
+           'install',
+           'install_lib',
+           'install_headers',
+           'install_scripts',
+           'install_data',
+           'sdist',
+           'register',
+           'bdist',
+           'bdist_dumb',
+           'bdist_rpm',
+           'bdist_wininst',
+           'check',
+           'upload',
+           # These two are reserved for future use:
+           #'bdist_sdux',
+           #'bdist_pkgtool',
+           # Note:
+           # bdist_packager is not included because it only provides
+           # an abstract base class
+          ]

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/bdist.py

@@ -0,0 +1,143 @@
+"""distutils.command.bdist
+
+Implements the Distutils 'bdist' command (create a built [binary]
+distribution)."""
+
+import os
+from distutils.core import Command
+from distutils.errors import *
+from distutils.util import get_platform
+
+
+def show_formats():
+    """Print list of available formats (arguments to "--format" option).
+    """
+    from distutils.fancy_getopt import FancyGetopt
+    formats = []
+    for format in bdist.format_commands:
+        formats.append(("formats=" + format, None,
+                        bdist.format_command[format][1]))
+    pretty_printer = FancyGetopt(formats)
+    pretty_printer.print_help("List of available distribution formats:")
+
+
+class bdist(Command):
+
+    description = "create a built (binary) distribution"
+
+    user_options = [('bdist-base=', 'b',
+                     "temporary directory for creating built distributions"),
+                    ('plat-name=', 'p',
+                     "platform name to embed in generated filenames "
+                     "(default: %s)" % get_platform()),
+                    ('formats=', None,
+                     "formats for distribution (comma-separated list)"),
+                    ('dist-dir=', 'd',
+                     "directory to put final built distributions in "
+                     "[default: dist]"),
+                    ('skip-build', None,
+                     "skip rebuilding everything (for testing/debugging)"),
+                    ('owner=', 'u',
+                     "Owner name used when creating a tar file"
+                     " [default: current user]"),
+                    ('group=', 'g',
+                     "Group name used when creating a tar file"
+                     " [default: current group]"),
+                   ]
+
+    boolean_options = ['skip-build']
+
+    help_options = [
+        ('help-formats', None,
+         "lists available distribution formats", show_formats),
+        ]
+
+    # The following commands do not take a format option from bdist
+    no_format_option = ('bdist_rpm',)
+
+    # This won't do in reality: will need to distinguish RPM-ish Linux,
+    # Debian-ish Linux, Solaris, FreeBSD, ..., Windows, Mac OS.
+    default_format = {'posix': 'gztar',
+                      'nt': 'zip'}
+
+    # Establish the preferred order (for the --help-formats option).
+    format_commands = ['rpm', 'gztar', 'bztar', 'xztar', 'ztar', 'tar',
+                       'wininst', 'zip', 'msi']
+
+    # And the real information.
+    format_command = {'rpm':   ('bdist_rpm',  "RPM distribution"),
+                      'gztar': ('bdist_dumb', "gzip'ed tar file"),
+                      'bztar': ('bdist_dumb', "bzip2'ed tar file"),
+                      'xztar': ('bdist_dumb', "xz'ed tar file"),
+                      'ztar':  ('bdist_dumb', "compressed tar file"),
+                      'tar':   ('bdist_dumb', "tar file"),
+                      'wininst': ('bdist_wininst',
+                                  "Windows executable installer"),
+                      'zip':   ('bdist_dumb', "ZIP file"),
+                      'msi':   ('bdist_msi',  "Microsoft Installer")
+                      }
+
+
+    def initialize_options(self):
+        self.bdist_base = None
+        self.plat_name = None
+        self.formats = None
+        self.dist_dir = None
+        self.skip_build = 0
+        self.group = None
+        self.owner = None
+
+    def finalize_options(self):
+        # have to finalize 'plat_name' before 'bdist_base'
+        if self.plat_name is None:
+            if self.skip_build:
+                self.plat_name = get_platform()
+            else:
+                self.plat_name = self.get_finalized_command('build').plat_name
+
+        # 'bdist_base' -- parent of per-built-distribution-format
+        # temporary directories (eg. we'll probably have
+        # "build/bdist.<plat>/dumb", "build/bdist.<plat>/rpm", etc.)
+        if self.bdist_base is None:
+            build_base = self.get_finalized_command('build').build_base
+            self.bdist_base = os.path.join(build_base,
+                                           'bdist.' + self.plat_name)
+
+        self.ensure_string_list('formats')
+        if self.formats is None:
+            try:
+                self.formats = [self.default_format[os.name]]
+            except KeyError:
+                raise DistutilsPlatformError(
+                      "don't know how to create built distributions "
+                      "on platform %s" % os.name)
+
+        if self.dist_dir is None:
+            self.dist_dir = "dist"
+
+    def run(self):
+        # Figure out which sub-commands we need to run.
+        commands = []
+        for format in self.formats:
+            try:
+                commands.append(self.format_command[format][0])
+            except KeyError:
+                raise DistutilsOptionError("invalid format '%s'" % format)
+
+        # Reinitialize and run each command.
+        for i in range(len(self.formats)):
+            cmd_name = commands[i]
+            sub_cmd = self.reinitialize_command(cmd_name)
+            if cmd_name not in self.no_format_option:
+                sub_cmd.format = self.formats[i]
+
+            # passing the owner and group names for tar archiving
+            if cmd_name == 'bdist_dumb':
+                sub_cmd.owner = self.owner
+                sub_cmd.group = self.group
+
+            # If we're going to need to run this command again, tell it to
+            # keep its temporary files around so subsequent runs go faster.
+            if cmd_name in commands[i+1:]:
+                sub_cmd.keep_temp = 1
+            self.run_command(cmd_name)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/bdist_dumb.py

@@ -0,0 +1,123 @@
+"""distutils.command.bdist_dumb
+
+Implements the Distutils 'bdist_dumb' command (create a "dumb" built
+distribution -- i.e., just an archive to be unpacked under $prefix or
+$exec_prefix)."""
+
+import os
+from distutils.core import Command
+from distutils.util import get_platform
+from distutils.dir_util import remove_tree, ensure_relative
+from distutils.errors import *
+from distutils.sysconfig import get_python_version
+from distutils import log
+
+class bdist_dumb(Command):
+
+    description = "create a \"dumb\" built distribution"
+
+    user_options = [('bdist-dir=', 'd',
+                     "temporary directory for creating the distribution"),
+                    ('plat-name=', 'p',
+                     "platform name to embed in generated filenames "
+                     "(default: %s)" % get_platform()),
+                    ('format=', 'f',
+                     "archive format to create (tar, gztar, bztar, xztar, "
+                     "ztar, zip)"),
+                    ('keep-temp', 'k',
+                     "keep the pseudo-installation tree around after " +
+                     "creating the distribution archive"),
+                    ('dist-dir=', 'd',
+                     "directory to put final built distributions in"),
+                    ('skip-build', None,
+                     "skip rebuilding everything (for testing/debugging)"),
+                    ('relative', None,
+                     "build the archive using relative paths "
+                     "(default: false)"),
+                    ('owner=', 'u',
+                     "Owner name used when creating a tar file"
+                     " [default: current user]"),
+                    ('group=', 'g',
+                     "Group name used when creating a tar file"
+                     " [default: current group]"),
+                   ]
+
+    boolean_options = ['keep-temp', 'skip-build', 'relative']
+
+    default_format = { 'posix': 'gztar',
+                       'nt': 'zip' }
+
+    def initialize_options(self):
+        self.bdist_dir = None
+        self.plat_name = None
+        self.format = None
+        self.keep_temp = 0
+        self.dist_dir = None
+        self.skip_build = None
+        self.relative = 0
+        self.owner = None
+        self.group = None
+
+    def finalize_options(self):
+        if self.bdist_dir is None:
+            bdist_base = self.get_finalized_command('bdist').bdist_base
+            self.bdist_dir = os.path.join(bdist_base, 'dumb')
+
+        if self.format is None:
+            try:
+                self.format = self.default_format[os.name]
+            except KeyError:
+                raise DistutilsPlatformError(
+                       "don't know how to create dumb built distributions "
+                       "on platform %s" % os.name)
+
+        self.set_undefined_options('bdist',
+                                   ('dist_dir', 'dist_dir'),
+                                   ('plat_name', 'plat_name'),
+                                   ('skip_build', 'skip_build'))
+
+    def run(self):
+        if not self.skip_build:
+            self.run_command('build')
+
+        install = self.reinitialize_command('install', reinit_subcommands=1)
+        install.root = self.bdist_dir
+        install.skip_build = self.skip_build
+        install.warn_dir = 0
+
+        log.info("installing to %s", self.bdist_dir)
+        self.run_command('install')
+
+        # And make an archive relative to the root of the
+        # pseudo-installation tree.
+        archive_basename = "%s.%s" % (self.distribution.get_fullname(),
+                                      self.plat_name)
+
+        pseudoinstall_root = os.path.join(self.dist_dir, archive_basename)
+        if not self.relative:
+            archive_root = self.bdist_dir
+        else:
+            if (self.distribution.has_ext_modules() and
+                (install.install_base != install.install_platbase)):
+                raise DistutilsPlatformError(
+                       "can't make a dumb built distribution where "
+                       "base and platbase are different (%s, %s)"
+                       % (repr(install.install_base),
+                          repr(install.install_platbase)))
+            else:
+                archive_root = os.path.join(self.bdist_dir,
+                                   ensure_relative(install.install_base))
+
+        # Make the archive
+        filename = self.make_archive(pseudoinstall_root,
+                                     self.format, root_dir=archive_root,
+                                     owner=self.owner, group=self.group)
+        if self.distribution.has_ext_modules():
+            pyversion = get_python_version()
+        else:
+            pyversion = 'any'
+        self.distribution.dist_files.append(('bdist_dumb', pyversion,
+                                             filename))
+
+        if not self.keep_temp:
+            remove_tree(self.bdist_dir, dry_run=self.dry_run)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/bdist_msi.py

@@ -0,0 +1,749 @@
+# Copyright (C) 2005, 2006 Martin von Löwis
+# Licensed to PSF under a Contributor Agreement.
+# The bdist_wininst command proper
+# based on bdist_wininst
+"""
+Implements the bdist_msi command.
+"""
+
+import os
+import sys
+import warnings
+from distutils.core import Command
+from distutils.dir_util import remove_tree
+from distutils.sysconfig import get_python_version
+from distutils.version import StrictVersion
+from distutils.errors import DistutilsOptionError
+from distutils.util import get_platform
+from distutils import log
+import msilib
+from msilib import schema, sequence, text
+from msilib import Directory, Feature, Dialog, add_data
+
+class PyDialog(Dialog):
+    """Dialog class with a fixed layout: controls at the top, then a ruler,
+    then a list of buttons: back, next, cancel. Optionally a bitmap at the
+    left."""
+    def __init__(self, *args, **kw):
+        """Dialog(database, name, x, y, w, h, attributes, title, first,
+        default, cancel, bitmap=true)"""
+        Dialog.__init__(self, *args)
+        ruler = self.h - 36
+        bmwidth = 152*ruler/328
+        #if kw.get("bitmap", True):
+        #    self.bitmap("Bitmap", 0, 0, bmwidth, ruler, "PythonWin")
+        self.line("BottomLine", 0, ruler, self.w, 0)
+
+    def title(self, title):
+        "Set the title text of the dialog at the top."
+        # name, x, y, w, h, flags=Visible|Enabled|Transparent|NoPrefix,
+        # text, in VerdanaBold10
+        self.text("Title", 15, 10, 320, 60, 0x30003,
+                  r"{\VerdanaBold10}%s" % title)
+
+    def back(self, title, next, name = "Back", active = 1):
+        """Add a back button with a given title, the tab-next button,
+        its name in the Control table, possibly initially disabled.
+
+        Return the button, so that events can be associated"""
+        if active:
+            flags = 3 # Visible|Enabled
+        else:
+            flags = 1 # Visible
+        return self.pushbutton(name, 180, self.h-27 , 56, 17, flags, title, next)
+
+    def cancel(self, title, next, name = "Cancel", active = 1):
+        """Add a cancel button with a given title, the tab-next button,
+        its name in the Control table, possibly initially disabled.
+
+        Return the button, so that events can be associated"""
+        if active:
+            flags = 3 # Visible|Enabled
+        else:
+            flags = 1 # Visible
+        return self.pushbutton(name, 304, self.h-27, 56, 17, flags, title, next)
+
+    def next(self, title, next, name = "Next", active = 1):
+        """Add a Next button with a given title, the tab-next button,
+        its name in the Control table, possibly initially disabled.
+
+        Return the button, so that events can be associated"""
+        if active:
+            flags = 3 # Visible|Enabled
+        else:
+            flags = 1 # Visible
+        return self.pushbutton(name, 236, self.h-27, 56, 17, flags, title, next)
+
+    def xbutton(self, name, title, next, xpos):
+        """Add a button with a given title, the tab-next button,
+        its name in the Control table, giving its x position; the
+        y-position is aligned with the other buttons.
+
+        Return the button, so that events can be associated"""
+        return self.pushbutton(name, int(self.w*xpos - 28), self.h-27, 56, 17, 3, title, next)
+
+class bdist_msi(Command):
+
+    description = "create a Microsoft Installer (.msi) binary distribution"
+
+    user_options = [('bdist-dir=', None,
+                     "temporary directory for creating the distribution"),
+                    ('plat-name=', 'p',
+                     "platform name to embed in generated filenames "
+                     "(default: %s)" % get_platform()),
+                    ('keep-temp', 'k',
+                     "keep the pseudo-installation tree around after " +
+                     "creating the distribution archive"),
+                    ('target-version=', None,
+                     "require a specific python version" +
+                     " on the target system"),
+                    ('no-target-compile', 'c',
+                     "do not compile .py to .pyc on the target system"),
+                    ('no-target-optimize', 'o',
+                     "do not compile .py to .pyo (optimized) "
+                     "on the target system"),
+                    ('dist-dir=', 'd',
+                     "directory to put final built distributions in"),
+                    ('skip-build', None,
+                     "skip rebuilding everything (for testing/debugging)"),
+                    ('install-script=', None,
+                     "basename of installation script to be run after "
+                     "installation or before deinstallation"),
+                    ('pre-install-script=', None,
+                     "Fully qualified filename of a script to be run before "
+                     "any files are installed.  This script need not be in the "
+                     "distribution"),
+                   ]
+
+    boolean_options = ['keep-temp', 'no-target-compile', 'no-target-optimize',
+                       'skip-build']
+
+    all_versions = ['2.0', '2.1', '2.2', '2.3', '2.4',
+                    '2.5', '2.6', '2.7', '2.8', '2.9',
+                    '3.0', '3.1', '3.2', '3.3', '3.4',
+                    '3.5', '3.6', '3.7', '3.8', '3.9']
+    other_version = 'X'
+
+    def __init__(self, *args, **kw):
+        super().__init__(*args, **kw)
+        warnings.warn("bdist_msi command is deprecated since Python 3.9, "
+                      "use bdist_wheel (wheel packages) instead",
+                      DeprecationWarning, 2)
+
+    def initialize_options(self):
+        self.bdist_dir = None
+        self.plat_name = None
+        self.keep_temp = 0
+        self.no_target_compile = 0
+        self.no_target_optimize = 0
+        self.target_version = None
+        self.dist_dir = None
+        self.skip_build = None
+        self.install_script = None
+        self.pre_install_script = None
+        self.versions = None
+
+    def finalize_options(self):
+        self.set_undefined_options('bdist', ('skip_build', 'skip_build'))
+
+        if self.bdist_dir is None:
+            bdist_base = self.get_finalized_command('bdist').bdist_base
+            self.bdist_dir = os.path.join(bdist_base, 'msi')
+
+        short_version = get_python_version()
+        if (not self.target_version) and self.distribution.has_ext_modules():
+            self.target_version = short_version
+
+        if self.target_version:
+            self.versions = [self.target_version]
+            if not self.skip_build and self.distribution.has_ext_modules()\
+               and self.target_version != short_version:
+                raise DistutilsOptionError(
+                      "target version can only be %s, or the '--skip-build'"
+                      " option must be specified" % (short_version,))
+        else:
+            self.versions = list(self.all_versions)
+
+        self.set_undefined_options('bdist',
+                                   ('dist_dir', 'dist_dir'),
+                                   ('plat_name', 'plat_name'),
+                                   )
+
+        if self.pre_install_script:
+            raise DistutilsOptionError(
+                  "the pre-install-script feature is not yet implemented")
+
+        if self.install_script:
+            for script in self.distribution.scripts:
+                if self.install_script == os.path.basename(script):
+                    break
+            else:
+                raise DistutilsOptionError(
+                      "install_script '%s' not found in scripts"
+                      % self.install_script)
+        self.install_script_key = None
+
+    def run(self):
+        if not self.skip_build:
+            self.run_command('build')
+
+        install = self.reinitialize_command('install', reinit_subcommands=1)
+        install.prefix = self.bdist_dir
+        install.skip_build = self.skip_build
+        install.warn_dir = 0
+
+        install_lib = self.reinitialize_command('install_lib')
+        # we do not want to include pyc or pyo files
+        install_lib.compile = 0
+        install_lib.optimize = 0
+
+        if self.distribution.has_ext_modules():
+            # If we are building an installer for a Python version other
+            # than the one we are currently running, then we need to ensure
+            # our build_lib reflects the other Python version rather than ours.
+            # Note that for target_version!=sys.version, we must have skipped the
+            # build step, so there is no issue with enforcing the build of this
+            # version.
+            target_version = self.target_version
+            if not target_version:
+                assert self.skip_build, "Should have already checked this"
+                target_version = '%d.%d' % sys.version_info[:2]
+            plat_specifier = ".%s-%s" % (self.plat_name, target_version)
+            build = self.get_finalized_command('build')
+            build.build_lib = os.path.join(build.build_base,
+                                           'lib' + plat_specifier)
+
+        log.info("installing to %s", self.bdist_dir)
+        install.ensure_finalized()
+
+        # avoid warning of 'install_lib' about installing
+        # into a directory not in sys.path
+        sys.path.insert(0, os.path.join(self.bdist_dir, 'PURELIB'))
+
+        install.run()
+
+        del sys.path[0]
+
+        self.mkpath(self.dist_dir)
+        fullname = self.distribution.get_fullname()
+        installer_name = self.get_installer_filename(fullname)
+        installer_name = os.path.abspath(installer_name)
+        if os.path.exists(installer_name): os.unlink(installer_name)
+
+        metadata = self.distribution.metadata
+        author = metadata.author
+        if not author:
+            author = metadata.maintainer
+        if not author:
+            author = "UNKNOWN"
+        version = metadata.get_version()
+        # ProductVersion must be strictly numeric
+        # XXX need to deal with prerelease versions
+        sversion = "%d.%d.%d" % StrictVersion(version).version
+        # Prefix ProductName with Python x.y, so that
+        # it sorts together with the other Python packages
+        # in Add-Remove-Programs (APR)
+        fullname = self.distribution.get_fullname()
+        if self.target_version:
+            product_name = "Python %s %s" % (self.target_version, fullname)
+        else:
+            product_name = "Python %s" % (fullname)
+        self.db = msilib.init_database(installer_name, schema,
+                product_name, msilib.gen_uuid(),
+                sversion, author)
+        msilib.add_tables(self.db, sequence)
+        props = [('DistVersion', version)]
+        email = metadata.author_email or metadata.maintainer_email
+        if email:
+            props.append(("ARPCONTACT", email))
+        if metadata.url:
+            props.append(("ARPURLINFOABOUT", metadata.url))
+        if props:
+            add_data(self.db, 'Property', props)
+
+        self.add_find_python()
+        self.add_files()
+        self.add_scripts()
+        self.add_ui()
+        self.db.Commit()
+
+        if hasattr(self.distribution, 'dist_files'):
+            tup = 'bdist_msi', self.target_version or 'any', fullname
+            self.distribution.dist_files.append(tup)
+
+        if not self.keep_temp:
+            remove_tree(self.bdist_dir, dry_run=self.dry_run)
+
+    def add_files(self):
+        db = self.db
+        cab = msilib.CAB("distfiles")
+        rootdir = os.path.abspath(self.bdist_dir)
+
+        root = Directory(db, cab, None, rootdir, "TARGETDIR", "SourceDir")
+        f = Feature(db, "Python", "Python", "Everything",
+                    0, 1, directory="TARGETDIR")
+
+        items = [(f, root, '')]
+        for version in self.versions + [self.other_version]:
+            target = "TARGETDIR" + version
+            name = default = "Python" + version
+            desc = "Everything"
+            if version is self.other_version:
+                title = "Python from another location"
+                level = 2
+            else:
+                title = "Python %s from registry" % version
+                level = 1
+            f = Feature(db, name, title, desc, 1, level, directory=target)
+            dir = Directory(db, cab, root, rootdir, target, default)
+            items.append((f, dir, version))
+        db.Commit()
+
+        seen = {}
+        for feature, dir, version in items:
+            todo = [dir]
+            while todo:
+                dir = todo.pop()
+                for file in os.listdir(dir.absolute):
+                    afile = os.path.join(dir.absolute, file)
+                    if os.path.isdir(afile):
+                        short = "%s|%s" % (dir.make_short(file), file)
+                        default = file + version
+                        newdir = Directory(db, cab, dir, file, default, short)
+                        todo.append(newdir)
+                    else:
+                        if not dir.component:
+                            dir.start_component(dir.logical, feature, 0)
+                        if afile not in seen:
+                            key = seen[afile] = dir.add_file(file)
+                            if file==self.install_script:
+                                if self.install_script_key:
+                                    raise DistutilsOptionError(
+                                          "Multiple files with name %s" % file)
+                                self.install_script_key = '[#%s]' % key
+                        else:
+                            key = seen[afile]
+                            add_data(self.db, "DuplicateFile",
+                                [(key + version, dir.component, key, None, dir.logical)])
+            db.Commit()
+        cab.commit(db)
+
+    def add_find_python(self):
+        """Adds code to the installer to compute the location of Python.
+
+        Properties PYTHON.MACHINE.X.Y and PYTHON.USER.X.Y will be set from the
+        registry for each version of Python.
+
+        Properties TARGETDIRX.Y will be set from PYTHON.USER.X.Y if defined,
+        else from PYTHON.MACHINE.X.Y.
+
+        Properties PYTHONX.Y will be set to TARGETDIRX.Y\\python.exe"""
+
+        start = 402
+        for ver in self.versions:
+            install_path = r"SOFTWARE\Python\PythonCore\%s\InstallPath" % ver
+            machine_reg = "python.machine." + ver
+            user_reg = "python.user." + ver
+            machine_prop = "PYTHON.MACHINE." + ver
+            user_prop = "PYTHON.USER." + ver
+            machine_action = "PythonFromMachine" + ver
+            user_action = "PythonFromUser" + ver
+            exe_action = "PythonExe" + ver
+            target_dir_prop = "TARGETDIR" + ver
+            exe_prop = "PYTHON" + ver
+            if msilib.Win64:
+                # type: msidbLocatorTypeRawValue + msidbLocatorType64bit
+                Type = 2+16
+            else:
+                Type = 2
+            add_data(self.db, "RegLocator",
+                    [(machine_reg, 2, install_path, None, Type),
+                     (user_reg, 1, install_path, None, Type)])
+            add_data(self.db, "AppSearch",
+                    [(machine_prop, machine_reg),
+                     (user_prop, user_reg)])
+            add_data(self.db, "CustomAction",
+                    [(machine_action, 51+256, target_dir_prop, "[" + machine_prop + "]"),
+                     (user_action, 51+256, target_dir_prop, "[" + user_prop + "]"),
+                     (exe_action, 51+256, exe_prop, "[" + target_dir_prop + "]\\python.exe"),
+                    ])
+            add_data(self.db, "InstallExecuteSequence",
+                    [(machine_action, machine_prop, start),
+                     (user_action, user_prop, start + 1),
+                     (exe_action, None, start + 2),
+                    ])
+            add_data(self.db, "InstallUISequence",
+                    [(machine_action, machine_prop, start),
+                     (user_action, user_prop, start + 1),
+                     (exe_action, None, start + 2),
+                    ])
+            add_data(self.db, "Condition",
+                    [("Python" + ver, 0, "NOT TARGETDIR" + ver)])
+            start += 4
+            assert start < 500
+
+    def add_scripts(self):
+        if self.install_script:
+            start = 6800
+            for ver in self.versions + [self.other_version]:
+                install_action = "install_script." + ver
+                exe_prop = "PYTHON" + ver
+                add_data(self.db, "CustomAction",
+                        [(install_action, 50, exe_prop, self.install_script_key)])
+                add_data(self.db, "InstallExecuteSequence",
+                        [(install_action, "&Python%s=3" % ver, start)])
+                start += 1
+        # XXX pre-install scripts are currently refused in finalize_options()
+        #     but if this feature is completed, it will also need to add
+        #     entries for each version as the above code does
+        if self.pre_install_script:
+            scriptfn = os.path.join(self.bdist_dir, "preinstall.bat")
+            with open(scriptfn, "w") as f:
+                # The batch file will be executed with [PYTHON], so that %1
+                # is the path to the Python interpreter; %0 will be the path
+                # of the batch file.
+                # rem ="""
+                # %1 %0
+                # exit
+                # """
+                # <actual script>
+                f.write('rem ="""\n%1 %0\nexit\n"""\n')
+                with open(self.pre_install_script) as fin:
+                    f.write(fin.read())
+            add_data(self.db, "Binary",
+                [("PreInstall", msilib.Binary(scriptfn))
+                ])
+            add_data(self.db, "CustomAction",
+                [("PreInstall", 2, "PreInstall", None)
+                ])
+            add_data(self.db, "InstallExecuteSequence",
+                    [("PreInstall", "NOT Installed", 450)])
+
+
+    def add_ui(self):
+        db = self.db
+        x = y = 50
+        w = 370
+        h = 300
+        title = "[ProductName] Setup"
+
+        # see "Dialog Style Bits"
+        modal = 3      # visible | modal
+        modeless = 1   # visible
+        track_disk_space = 32
+
+        # UI customization properties
+        add_data(db, "Property",
+                 # See "DefaultUIFont Property"
+                 [("DefaultUIFont", "DlgFont8"),
+                  # See "ErrorDialog Style Bit"
+                  ("ErrorDialog", "ErrorDlg"),
+                  ("Progress1", "Install"),   # modified in maintenance type dlg
+                  ("Progress2", "installs"),
+                  ("MaintenanceForm_Action", "Repair"),
+                  # possible values: ALL, JUSTME
+                  ("WhichUsers", "ALL")
+                 ])
+
+        # Fonts, see "TextStyle Table"
+        add_data(db, "TextStyle",
+                 [("DlgFont8", "Tahoma", 9, None, 0),
+                  ("DlgFontBold8", "Tahoma", 8, None, 1), #bold
+                  ("VerdanaBold10", "Verdana", 10, None, 1),
+                  ("VerdanaRed9", "Verdana", 9, 255, 0),
+                 ])
+
+        # UI Sequences, see "InstallUISequence Table", "Using a Sequence Table"
+        # Numbers indicate sequence; see sequence.py for how these action integrate
+        add_data(db, "InstallUISequence",
+                 [("PrepareDlg", "Not Privileged or Windows9x or Installed", 140),
+                  ("WhichUsersDlg", "Privileged and not Windows9x and not Installed", 141),
+                  # In the user interface, assume all-users installation if privileged.
+                  ("SelectFeaturesDlg", "Not Installed", 1230),
+                  # XXX no support for resume installations yet
+                  #("ResumeDlg", "Installed AND (RESUME OR Preselected)", 1240),
+                  ("MaintenanceTypeDlg", "Installed AND NOT RESUME AND NOT Preselected", 1250),
+                  ("ProgressDlg", None, 1280)])
+
+        add_data(db, 'ActionText', text.ActionText)
+        add_data(db, 'UIText', text.UIText)
+        #####################################################################
+        # Standard dialogs: FatalError, UserExit, ExitDialog
+        fatal=PyDialog(db, "FatalError", x, y, w, h, modal, title,
+                     "Finish", "Finish", "Finish")
+        fatal.title("[ProductName] Installer ended prematurely")
+        fatal.back("< Back", "Finish", active = 0)
+        fatal.cancel("Cancel", "Back", active = 0)
+        fatal.text("Description1", 15, 70, 320, 80, 0x30003,
+                   "[ProductName] setup ended prematurely because of an error.  Your system has not been modified.  To install this program at a later time, please run the installation again.")
+        fatal.text("Description2", 15, 155, 320, 20, 0x30003,
+                   "Click the Finish button to exit the Installer.")
+        c=fatal.next("Finish", "Cancel", name="Finish")
+        c.event("EndDialog", "Exit")
+
+        user_exit=PyDialog(db, "UserExit", x, y, w, h, modal, title,
+                     "Finish", "Finish", "Finish")
+        user_exit.title("[ProductName] Installer was interrupted")
+        user_exit.back("< Back", "Finish", active = 0)
+        user_exit.cancel("Cancel", "Back", active = 0)
+        user_exit.text("Description1", 15, 70, 320, 80, 0x30003,
+                   "[ProductName] setup was interrupted.  Your system has not been modified.  "
+                   "To install this program at a later time, please run the installation again.")
+        user_exit.text("Description2", 15, 155, 320, 20, 0x30003,
+                   "Click the Finish button to exit the Installer.")
+        c = user_exit.next("Finish", "Cancel", name="Finish")
+        c.event("EndDialog", "Exit")
+
+        exit_dialog = PyDialog(db, "ExitDialog", x, y, w, h, modal, title,
+                             "Finish", "Finish", "Finish")
+        exit_dialog.title("Completing the [ProductName] Installer")
+        exit_dialog.back("< Back", "Finish", active = 0)
+        exit_dialog.cancel("Cancel", "Back", active = 0)
+        exit_dialog.text("Description", 15, 235, 320, 20, 0x30003,
+                   "Click the Finish button to exit the Installer.")
+        c = exit_dialog.next("Finish", "Cancel", name="Finish")
+        c.event("EndDialog", "Return")
+
+        #####################################################################
+        # Required dialog: FilesInUse, ErrorDlg
+        inuse = PyDialog(db, "FilesInUse",
+                         x, y, w, h,
+                         19,                # KeepModeless|Modal|Visible
+                         title,
+                         "Retry", "Retry", "Retry", bitmap=False)
+        inuse.text("Title", 15, 6, 200, 15, 0x30003,
+                   r"{\DlgFontBold8}Files in Use")
+        inuse.text("Description", 20, 23, 280, 20, 0x30003,
+               "Some files that need to be updated are currently in use.")
+        inuse.text("Text", 20, 55, 330, 50, 3,
+                   "The following applications are using files that need to be updated by this setup. Close these applications and then click Retry to continue the installation or Cancel to exit it.")
+        inuse.control("List", "ListBox", 20, 107, 330, 130, 7, "FileInUseProcess",
+                      None, None, None)
+        c=inuse.back("Exit", "Ignore", name="Exit")
+        c.event("EndDialog", "Exit")
+        c=inuse.next("Ignore", "Retry", name="Ignore")
+        c.event("EndDialog", "Ignore")
+        c=inuse.cancel("Retry", "Exit", name="Retry")
+        c.event("EndDialog","Retry")
+
+        # See "Error Dialog". See "ICE20" for the required names of the controls.
+        error = Dialog(db, "ErrorDlg",
+                       50, 10, 330, 101,
+                       65543,       # Error|Minimize|Modal|Visible
+                       title,
+                       "ErrorText", None, None)
+        error.text("ErrorText", 50,9,280,48,3, "")
+        #error.control("ErrorIcon", "Icon", 15, 9, 24, 24, 5242881, None, "py.ico", None, None)
+        error.pushbutton("N",120,72,81,21,3,"No",None).event("EndDialog","ErrorNo")
+        error.pushbutton("Y",240,72,81,21,3,"Yes",None).event("EndDialog","ErrorYes")
+        error.pushbutton("A",0,72,81,21,3,"Abort",None).event("EndDialog","ErrorAbort")
+        error.pushbutton("C",42,72,81,21,3,"Cancel",None).event("EndDialog","ErrorCancel")
+        error.pushbutton("I",81,72,81,21,3,"Ignore",None).event("EndDialog","ErrorIgnore")
+        error.pushbutton("O",159,72,81,21,3,"Ok",None).event("EndDialog","ErrorOk")
+        error.pushbutton("R",198,72,81,21,3,"Retry",None).event("EndDialog","ErrorRetry")
+
+        #####################################################################
+        # Global "Query Cancel" dialog
+        cancel = Dialog(db, "CancelDlg", 50, 10, 260, 85, 3, title,
+                        "No", "No", "No")
+        cancel.text("Text", 48, 15, 194, 30, 3,
+                    "Are you sure you want to cancel [ProductName] installation?")
+        #cancel.control("Icon", "Icon", 15, 15, 24, 24, 5242881, None,
+        #               "py.ico", None, None)
+        c=cancel.pushbutton("Yes", 72, 57, 56, 17, 3, "Yes", "No")
+        c.event("EndDialog", "Exit")
+
+        c=cancel.pushbutton("No", 132, 57, 56, 17, 3, "No", "Yes")
+        c.event("EndDialog", "Return")
+
+        #####################################################################
+        # Global "Wait for costing" dialog
+        costing = Dialog(db, "WaitForCostingDlg", 50, 10, 260, 85, modal, title,
+                         "Return", "Return", "Return")
+        costing.text("Text", 48, 15, 194, 30, 3,
+                     "Please wait while the installer finishes determining your disk space requirements.")
+        c = costing.pushbutton("Return", 102, 57, 56, 17, 3, "Return", None)
+        c.event("EndDialog", "Exit")
+
+        #####################################################################
+        # Preparation dialog: no user input except cancellation
+        prep = PyDialog(db, "PrepareDlg", x, y, w, h, modeless, title,
+                        "Cancel", "Cancel", "Cancel")
+        prep.text("Description", 15, 70, 320, 40, 0x30003,
+                  "Please wait while the Installer prepares to guide you through the installation.")
+        prep.title("Welcome to the [ProductName] Installer")
+        c=prep.text("ActionText", 15, 110, 320, 20, 0x30003, "Pondering...")
+        c.mapping("ActionText", "Text")
+        c=prep.text("ActionData", 15, 135, 320, 30, 0x30003, None)
+        c.mapping("ActionData", "Text")
+        prep.back("Back", None, active=0)
+        prep.next("Next", None, active=0)
+        c=prep.cancel("Cancel", None)
+        c.event("SpawnDialog", "CancelDlg")
+
+        #####################################################################
+        # Feature (Python directory) selection
+        seldlg = PyDialog(db, "SelectFeaturesDlg", x, y, w, h, modal, title,
+                        "Next", "Next", "Cancel")
+        seldlg.title("Select Python Installations")
+
+        seldlg.text("Hint", 15, 30, 300, 20, 3,
+                    "Select the Python locations where %s should be installed."
+                    % self.distribution.get_fullname())
+
+        seldlg.back("< Back", None, active=0)
+        c = seldlg.next("Next >", "Cancel")
+        order = 1
+        c.event("[TARGETDIR]", "[SourceDir]", ordering=order)
+        for version in self.versions + [self.other_version]:
+            order += 1
+            c.event("[TARGETDIR]", "[TARGETDIR%s]" % version,
+                    "FEATURE_SELECTED AND &Python%s=3" % version,
+                    ordering=order)
+        c.event("SpawnWaitDialog", "WaitForCostingDlg", ordering=order + 1)
+        c.event("EndDialog", "Return", ordering=order + 2)
+        c = seldlg.cancel("Cancel", "Features")
+        c.event("SpawnDialog", "CancelDlg")
+
+        c = seldlg.control("Features", "SelectionTree", 15, 60, 300, 120, 3,
+                           "FEATURE", None, "PathEdit", None)
+        c.event("[FEATURE_SELECTED]", "1")
+        ver = self.other_version
+        install_other_cond = "FEATURE_SELECTED AND &Python%s=3" % ver
+        dont_install_other_cond = "FEATURE_SELECTED AND &Python%s<>3" % ver
+
+        c = seldlg.text("Other", 15, 200, 300, 15, 3,
+                        "Provide an alternate Python location")
+        c.condition("Enable", install_other_cond)
+        c.condition("Show", install_other_cond)
+        c.condition("Disable", dont_install_other_cond)
+        c.condition("Hide", dont_install_other_cond)
+
+        c = seldlg.control("PathEdit", "PathEdit", 15, 215, 300, 16, 1,
+                           "TARGETDIR" + ver, None, "Next", None)
+        c.condition("Enable", install_other_cond)
+        c.condition("Show", install_other_cond)
+        c.condition("Disable", dont_install_other_cond)
+        c.condition("Hide", dont_install_other_cond)
+
+        #####################################################################
+        # Disk cost
+        cost = PyDialog(db, "DiskCostDlg", x, y, w, h, modal, title,
+                        "OK", "OK", "OK", bitmap=False)
+        cost.text("Title", 15, 6, 200, 15, 0x30003,
+                 r"{\DlgFontBold8}Disk Space Requirements")
+        cost.text("Description", 20, 20, 280, 20, 0x30003,
+                  "The disk space required for the installation of the selected features.")
+        cost.text("Text", 20, 53, 330, 60, 3,
+                  "The highlighted volumes (if any) do not have enough disk space "
+              "available for the currently selected features.  You can either "
+              "remove some files from the highlighted volumes, or choose to "
+              "install less features onto local drive(s), or select different "
+              "destination drive(s).")
+        cost.control("VolumeList", "VolumeCostList", 20, 100, 330, 150, 393223,
+                     None, "{120}{70}{70}{70}{70}", None, None)
+        cost.xbutton("OK", "Ok", None, 0.5).event("EndDialog", "Return")
+
+        #####################################################################
+        # WhichUsers Dialog. Only available on NT, and for privileged users.
+        # This must be run before FindRelatedProducts, because that will
+        # take into account whether the previous installation was per-user
+        # or per-machine. We currently don't support going back to this
+        # dialog after "Next" was selected; to support this, we would need to
+        # find how to reset the ALLUSERS property, and how to re-run
+        # FindRelatedProducts.
+        # On Windows9x, the ALLUSERS property is ignored on the command line
+        # and in the Property table, but installer fails according to the documentation
+        # if a dialog attempts to set ALLUSERS.
+        whichusers = PyDialog(db, "WhichUsersDlg", x, y, w, h, modal, title,
+                            "AdminInstall", "Next", "Cancel")
+        whichusers.title("Select whether to install [ProductName] for all users of this computer.")
+        # A radio group with two options: allusers, justme
+        g = whichusers.radiogroup("AdminInstall", 15, 60, 260, 50, 3,
+                                  "WhichUsers", "", "Next")
+        g.add("ALL", 0, 5, 150, 20, "Install for all users")
+        g.add("JUSTME", 0, 25, 150, 20, "Install just for me")
+
+        whichusers.back("Back", None, active=0)
+
+        c = whichusers.next("Next >", "Cancel")
+        c.event("[ALLUSERS]", "1", 'WhichUsers="ALL"', 1)
+        c.event("EndDialog", "Return", ordering = 2)
+
+        c = whichusers.cancel("Cancel", "AdminInstall")
+        c.event("SpawnDialog", "CancelDlg")
+
+        #####################################################################
+        # Installation Progress dialog (modeless)
+        progress = PyDialog(db, "ProgressDlg", x, y, w, h, modeless, title,
+                            "Cancel", "Cancel", "Cancel", bitmap=False)
+        progress.text("Title", 20, 15, 200, 15, 0x30003,
+                     r"{\DlgFontBold8}[Progress1] [ProductName]")
+        progress.text("Text", 35, 65, 300, 30, 3,
+                      "Please wait while the Installer [Progress2] [ProductName]. "
+                      "This may take several minutes.")
+        progress.text("StatusLabel", 35, 100, 35, 20, 3, "Status:")
+
+        c=progress.text("ActionText", 70, 100, w-70, 20, 3, "Pondering...")
+        c.mapping("ActionText", "Text")
+
+        #c=progress.text("ActionData", 35, 140, 300, 20, 3, None)
+        #c.mapping("ActionData", "Text")
+
+        c=progress.control("ProgressBar", "ProgressBar", 35, 120, 300, 10, 65537,
+                           None, "Progress done", None, None)
+        c.mapping("SetProgress", "Progress")
+
+        progress.back("< Back", "Next", active=False)
+        progress.next("Next >", "Cancel", active=False)
+        progress.cancel("Cancel", "Back").event("SpawnDialog", "CancelDlg")
+
+        ###################################################################
+        # Maintenance type: repair/uninstall
+        maint = PyDialog(db, "MaintenanceTypeDlg", x, y, w, h, modal, title,
+                         "Next", "Next", "Cancel")
+        maint.title("Welcome to the [ProductName] Setup Wizard")
+        maint.text("BodyText", 15, 63, 330, 42, 3,
+                   "Select whether you want to repair or remove [ProductName].")
+        g=maint.radiogroup("RepairRadioGroup", 15, 108, 330, 60, 3,
+                            "MaintenanceForm_Action", "", "Next")
+        #g.add("Change", 0, 0, 200, 17, "&Change [ProductName]")
+        g.add("Repair", 0, 18, 200, 17, "&Repair [ProductName]")
+        g.add("Remove", 0, 36, 200, 17, "Re&move [ProductName]")
+
+        maint.back("< Back", None, active=False)
+        c=maint.next("Finish", "Cancel")
+        # Change installation: Change progress dialog to "Change", then ask
+        # for feature selection
+        #c.event("[Progress1]", "Change", 'MaintenanceForm_Action="Change"', 1)
+        #c.event("[Progress2]", "changes", 'MaintenanceForm_Action="Change"', 2)
+
+        # Reinstall: Change progress dialog to "Repair", then invoke reinstall
+        # Also set list of reinstalled features to "ALL"
+        c.event("[REINSTALL]", "ALL", 'MaintenanceForm_Action="Repair"', 5)
+        c.event("[Progress1]", "Repairing", 'MaintenanceForm_Action="Repair"', 6)
+        c.event("[Progress2]", "repairs", 'MaintenanceForm_Action="Repair"', 7)
+        c.event("Reinstall", "ALL", 'MaintenanceForm_Action="Repair"', 8)
+
+        # Uninstall: Change progress to "Remove", then invoke uninstall
+        # Also set list of removed features to "ALL"
+        c.event("[REMOVE]", "ALL", 'MaintenanceForm_Action="Remove"', 11)
+        c.event("[Progress1]", "Removing", 'MaintenanceForm_Action="Remove"', 12)
+        c.event("[Progress2]", "removes", 'MaintenanceForm_Action="Remove"', 13)
+        c.event("Remove", "ALL", 'MaintenanceForm_Action="Remove"', 14)
+
+        # Close dialog when maintenance action scheduled
+        c.event("EndDialog", "Return", 'MaintenanceForm_Action<>"Change"', 20)
+        #c.event("NewDialog", "SelectFeaturesDlg", 'MaintenanceForm_Action="Change"', 21)
+
+        maint.cancel("Cancel", "RepairRadioGroup").event("SpawnDialog", "CancelDlg")
+
+    def get_installer_filename(self, fullname):
+        # Factored out to allow overriding in subclasses
+        if self.target_version:
+            base_name = "%s.%s-py%s.msi" % (fullname, self.plat_name,
+                                            self.target_version)
+        else:
+            base_name = "%s.%s.msi" % (fullname, self.plat_name)
+        installer_name = os.path.join(self.dist_dir, base_name)
+        return installer_name

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/bdist_rpm.py

@@ -0,0 +1,579 @@
+"""distutils.command.bdist_rpm
+
+Implements the Distutils 'bdist_rpm' command (create RPM source and binary
+distributions)."""
+
+import subprocess, sys, os
+from distutils.core import Command
+from distutils.debug import DEBUG
+from distutils.file_util import write_file
+from distutils.errors import *
+from distutils.sysconfig import get_python_version
+from distutils import log
+
+class bdist_rpm(Command):
+
+    description = "create an RPM distribution"
+
+    user_options = [
+        ('bdist-base=', None,
+         "base directory for creating built distributions"),
+        ('rpm-base=', None,
+         "base directory for creating RPMs (defaults to \"rpm\" under "
+         "--bdist-base; must be specified for RPM 2)"),
+        ('dist-dir=', 'd',
+         "directory to put final RPM files in "
+         "(and .spec files if --spec-only)"),
+        ('python=', None,
+         "path to Python interpreter to hard-code in the .spec file "
+         "(default: \"python\")"),
+        ('fix-python', None,
+         "hard-code the exact path to the current Python interpreter in "
+         "the .spec file"),
+        ('spec-only', None,
+         "only regenerate spec file"),
+        ('source-only', None,
+         "only generate source RPM"),
+        ('binary-only', None,
+         "only generate binary RPM"),
+        ('use-bzip2', None,
+         "use bzip2 instead of gzip to create source distribution"),
+
+        # More meta-data: too RPM-specific to put in the setup script,
+        # but needs to go in the .spec file -- so we make these options
+        # to "bdist_rpm".  The idea is that packagers would put this
+        # info in setup.cfg, although they are of course free to
+        # supply it on the command line.
+        ('distribution-name=', None,
+         "name of the (Linux) distribution to which this "
+         "RPM applies (*not* the name of the module distribution!)"),
+        ('group=', None,
+         "package classification [default: \"Development/Libraries\"]"),
+        ('release=', None,
+         "RPM release number"),
+        ('serial=', None,
+         "RPM serial number"),
+        ('vendor=', None,
+         "RPM \"vendor\" (eg. \"Joe Blow <joe@example.com>\") "
+         "[default: maintainer or author from setup script]"),
+        ('packager=', None,
+         "RPM packager (eg. \"Jane Doe <jane@example.net>\") "
+         "[default: vendor]"),
+        ('doc-files=', None,
+         "list of documentation files (space or comma-separated)"),
+        ('changelog=', None,
+         "RPM changelog"),
+        ('icon=', None,
+         "name of icon file"),
+        ('provides=', None,
+         "capabilities provided by this package"),
+        ('requires=', None,
+         "capabilities required by this package"),
+        ('conflicts=', None,
+         "capabilities which conflict with this package"),
+        ('build-requires=', None,
+         "capabilities required to build this package"),
+        ('obsoletes=', None,
+         "capabilities made obsolete by this package"),
+        ('no-autoreq', None,
+         "do not automatically calculate dependencies"),
+
+        # Actions to take when building RPM
+        ('keep-temp', 'k',
+         "don't clean up RPM build directory"),
+        ('no-keep-temp', None,
+         "clean up RPM build directory [default]"),
+        ('use-rpm-opt-flags', None,
+         "compile with RPM_OPT_FLAGS when building from source RPM"),
+        ('no-rpm-opt-flags', None,
+         "do not pass any RPM CFLAGS to compiler"),
+        ('rpm3-mode', None,
+         "RPM 3 compatibility mode (default)"),
+        ('rpm2-mode', None,
+         "RPM 2 compatibility mode"),
+
+        # Add the hooks necessary for specifying custom scripts
+        ('prep-script=', None,
+         "Specify a script for the PREP phase of RPM building"),
+        ('build-script=', None,
+         "Specify a script for the BUILD phase of RPM building"),
+
+        ('pre-install=', None,
+         "Specify a script for the pre-INSTALL phase of RPM building"),
+        ('install-script=', None,
+         "Specify a script for the INSTALL phase of RPM building"),
+        ('post-install=', None,
+         "Specify a script for the post-INSTALL phase of RPM building"),
+
+        ('pre-uninstall=', None,
+         "Specify a script for the pre-UNINSTALL phase of RPM building"),
+        ('post-uninstall=', None,
+         "Specify a script for the post-UNINSTALL phase of RPM building"),
+
+        ('clean-script=', None,
+         "Specify a script for the CLEAN phase of RPM building"),
+
+        ('verify-script=', None,
+         "Specify a script for the VERIFY phase of the RPM build"),
+
+        # Allow a packager to explicitly force an architecture
+        ('force-arch=', None,
+         "Force an architecture onto the RPM build process"),
+
+        ('quiet', 'q',
+         "Run the INSTALL phase of RPM building in quiet mode"),
+        ]
+
+    boolean_options = ['keep-temp', 'use-rpm-opt-flags', 'rpm3-mode',
+                       'no-autoreq', 'quiet']
+
+    negative_opt = {'no-keep-temp': 'keep-temp',
+                    'no-rpm-opt-flags': 'use-rpm-opt-flags',
+                    'rpm2-mode': 'rpm3-mode'}
+
+
+    def initialize_options(self):
+        self.bdist_base = None
+        self.rpm_base = None
+        self.dist_dir = None
+        self.python = None
+        self.fix_python = None
+        self.spec_only = None
+        self.binary_only = None
+        self.source_only = None
+        self.use_bzip2 = None
+
+        self.distribution_name = None
+        self.group = None
+        self.release = None
+        self.serial = None
+        self.vendor = None
+        self.packager = None
+        self.doc_files = None
+        self.changelog = None
+        self.icon = None
+
+        self.prep_script = None
+        self.build_script = None
+        self.install_script = None
+        self.clean_script = None
+        self.verify_script = None
+        self.pre_install = None
+        self.post_install = None
+        self.pre_uninstall = None
+        self.post_uninstall = None
+        self.prep = None
+        self.provides = None
+        self.requires = None
+        self.conflicts = None
+        self.build_requires = None
+        self.obsoletes = None
+
+        self.keep_temp = 0
+        self.use_rpm_opt_flags = 1
+        self.rpm3_mode = 1
+        self.no_autoreq = 0
+
+        self.force_arch = None
+        self.quiet = 0
+
+    def finalize_options(self):
+        self.set_undefined_options('bdist', ('bdist_base', 'bdist_base'))
+        if self.rpm_base is None:
+            if not self.rpm3_mode:
+                raise DistutilsOptionError(
+                      "you must specify --rpm-base in RPM 2 mode")
+            self.rpm_base = os.path.join(self.bdist_base, "rpm")
+
+        if self.python is None:
+            if self.fix_python:
+                self.python = sys.executable
+            else:
+                self.python = "python3"
+        elif self.fix_python:
+            raise DistutilsOptionError(
+                  "--python and --fix-python are mutually exclusive options")
+
+        if os.name != 'posix':
+            raise DistutilsPlatformError("don't know how to create RPM "
+                   "distributions on platform %s" % os.name)
+        if self.binary_only and self.source_only:
+            raise DistutilsOptionError(
+                  "cannot supply both '--source-only' and '--binary-only'")
+
+        # don't pass CFLAGS to pure python distributions
+        if not self.distribution.has_ext_modules():
+            self.use_rpm_opt_flags = 0
+
+        self.set_undefined_options('bdist', ('dist_dir', 'dist_dir'))
+        self.finalize_package_data()
+
+    def finalize_package_data(self):
+        self.ensure_string('group', "Development/Libraries")
+        self.ensure_string('vendor',
+                           "%s <%s>" % (self.distribution.get_contact(),
+                                        self.distribution.get_contact_email()))
+        self.ensure_string('packager')
+        self.ensure_string_list('doc_files')
+        if isinstance(self.doc_files, list):
+            for readme in ('README', 'README.txt'):
+                if os.path.exists(readme) and readme not in self.doc_files:
+                    self.doc_files.append(readme)
+
+        self.ensure_string('release', "1")
+        self.ensure_string('serial')   # should it be an int?
+
+        self.ensure_string('distribution_name')
+
+        self.ensure_string('changelog')
+          # Format changelog correctly
+        self.changelog = self._format_changelog(self.changelog)
+
+        self.ensure_filename('icon')
+
+        self.ensure_filename('prep_script')
+        self.ensure_filename('build_script')
+        self.ensure_filename('install_script')
+        self.ensure_filename('clean_script')
+        self.ensure_filename('verify_script')
+        self.ensure_filename('pre_install')
+        self.ensure_filename('post_install')
+        self.ensure_filename('pre_uninstall')
+        self.ensure_filename('post_uninstall')
+
+        # XXX don't forget we punted on summaries and descriptions -- they
+        # should be handled here eventually!
+
+        # Now *this* is some meta-data that belongs in the setup script...
+        self.ensure_string_list('provides')
+        self.ensure_string_list('requires')
+        self.ensure_string_list('conflicts')
+        self.ensure_string_list('build_requires')
+        self.ensure_string_list('obsoletes')
+
+        self.ensure_string('force_arch')
+
+    def run(self):
+        if DEBUG:
+            print("before _get_package_data():")
+            print("vendor =", self.vendor)
+            print("packager =", self.packager)
+            print("doc_files =", self.doc_files)
+            print("changelog =", self.changelog)
+
+        # make directories
+        if self.spec_only:
+            spec_dir = self.dist_dir
+            self.mkpath(spec_dir)
+        else:
+            rpm_dir = {}
+            for d in ('SOURCES', 'SPECS', 'BUILD', 'RPMS', 'SRPMS'):
+                rpm_dir[d] = os.path.join(self.rpm_base, d)
+                self.mkpath(rpm_dir[d])
+            spec_dir = rpm_dir['SPECS']
+
+        # Spec file goes into 'dist_dir' if '--spec-only specified',
+        # build/rpm.<plat> otherwise.
+        spec_path = os.path.join(spec_dir,
+                                 "%s.spec" % self.distribution.get_name())
+        self.execute(write_file,
+                     (spec_path,
+                      self._make_spec_file()),
+                     "writing '%s'" % spec_path)
+
+        if self.spec_only: # stop if requested
+            return
+
+        # Make a source distribution and copy to SOURCES directory with
+        # optional icon.
+        saved_dist_files = self.distribution.dist_files[:]
+        sdist = self.reinitialize_command('sdist')
+        if self.use_bzip2:
+            sdist.formats = ['bztar']
+        else:
+            sdist.formats = ['gztar']
+        self.run_command('sdist')
+        self.distribution.dist_files = saved_dist_files
+
+        source = sdist.get_archive_files()[0]
+        source_dir = rpm_dir['SOURCES']
+        self.copy_file(source, source_dir)
+
+        if self.icon:
+            if os.path.exists(self.icon):
+                self.copy_file(self.icon, source_dir)
+            else:
+                raise DistutilsFileError(
+                      "icon file '%s' does not exist" % self.icon)
+
+        # build package
+        log.info("building RPMs")
+        rpm_cmd = ['rpmbuild']
+
+        if self.source_only: # what kind of RPMs?
+            rpm_cmd.append('-bs')
+        elif self.binary_only:
+            rpm_cmd.append('-bb')
+        else:
+            rpm_cmd.append('-ba')
+        rpm_cmd.extend(['--define', '__python %s' % self.python])
+        if self.rpm3_mode:
+            rpm_cmd.extend(['--define',
+                             '_topdir %s' % os.path.abspath(self.rpm_base)])
+        if not self.keep_temp:
+            rpm_cmd.append('--clean')
+
+        if self.quiet:
+            rpm_cmd.append('--quiet')
+
+        rpm_cmd.append(spec_path)
+        # Determine the binary rpm names that should be built out of this spec
+        # file
+        # Note that some of these may not be really built (if the file
+        # list is empty)
+        nvr_string = "%{name}-%{version}-%{release}"
+        src_rpm = nvr_string + ".src.rpm"
+        non_src_rpm = "%{arch}/" + nvr_string + ".%{arch}.rpm"
+        q_cmd = r"rpm -q --qf '%s %s\n' --specfile '%s'" % (
+            src_rpm, non_src_rpm, spec_path)
+
+        out = os.popen(q_cmd)
+        try:
+            binary_rpms = []
+            source_rpm = None
+            while True:
+                line = out.readline()
+                if not line:
+                    break
+                l = line.strip().split()
+                assert(len(l) == 2)
+                binary_rpms.append(l[1])
+                # The source rpm is named after the first entry in the spec file
+                if source_rpm is None:
+                    source_rpm = l[0]
+
+            status = out.close()
+            if status:
+                raise DistutilsExecError("Failed to execute: %s" % repr(q_cmd))
+
+        finally:
+            out.close()
+
+        self.spawn(rpm_cmd)
+
+        if not self.dry_run:
+            if self.distribution.has_ext_modules():
+                pyversion = get_python_version()
+            else:
+                pyversion = 'any'
+
+            if not self.binary_only:
+                srpm = os.path.join(rpm_dir['SRPMS'], source_rpm)
+                assert(os.path.exists(srpm))
+                self.move_file(srpm, self.dist_dir)
+                filename = os.path.join(self.dist_dir, source_rpm)
+                self.distribution.dist_files.append(
+                    ('bdist_rpm', pyversion, filename))
+
+            if not self.source_only:
+                for rpm in binary_rpms:
+                    rpm = os.path.join(rpm_dir['RPMS'], rpm)
+                    if os.path.exists(rpm):
+                        self.move_file(rpm, self.dist_dir)
+                        filename = os.path.join(self.dist_dir,
+                                                os.path.basename(rpm))
+                        self.distribution.dist_files.append(
+                            ('bdist_rpm', pyversion, filename))
+
+    def _dist_path(self, path):
+        return os.path.join(self.dist_dir, os.path.basename(path))
+
+    def _make_spec_file(self):
+        """Generate the text of an RPM spec file and return it as a
+        list of strings (one per line).
+        """
+        # definitions and headers
+        spec_file = [
+            '%define name ' + self.distribution.get_name(),
+            '%define version ' + self.distribution.get_version().replace('-','_'),
+            '%define unmangled_version ' + self.distribution.get_version(),
+            '%define release ' + self.release.replace('-','_'),
+            '',
+            'Summary: ' + self.distribution.get_description(),
+            ]
+
+        # Workaround for #14443 which affects some RPM based systems such as
+        # RHEL6 (and probably derivatives)
+        vendor_hook = subprocess.getoutput('rpm --eval %{__os_install_post}')
+        # Generate a potential replacement value for __os_install_post (whilst
+        # normalizing the whitespace to simplify the test for whether the
+        # invocation of brp-python-bytecompile passes in __python):
+        vendor_hook = '\n'.join(['  %s \\' % line.strip()
+                                 for line in vendor_hook.splitlines()])
+        problem = "brp-python-bytecompile \\\n"
+        fixed = "brp-python-bytecompile %{__python} \\\n"
+        fixed_hook = vendor_hook.replace(problem, fixed)
+        if fixed_hook != vendor_hook:
+            spec_file.append('# Workaround for http://bugs.python.org/issue14443')
+            spec_file.append('%define __os_install_post ' + fixed_hook + '\n')
+
+        # put locale summaries into spec file
+        # XXX not supported for now (hard to put a dictionary
+        # in a config file -- arg!)
+        #for locale in self.summaries.keys():
+        #    spec_file.append('Summary(%s): %s' % (locale,
+        #                                          self.summaries[locale]))
+
+        spec_file.extend([
+            'Name: %{name}',
+            'Version: %{version}',
+            'Release: %{release}',])
+
+        # XXX yuck! this filename is available from the "sdist" command,
+        # but only after it has run: and we create the spec file before
+        # running "sdist", in case of --spec-only.
+        if self.use_bzip2:
+            spec_file.append('Source0: %{name}-%{unmangled_version}.tar.bz2')
+        else:
+            spec_file.append('Source0: %{name}-%{unmangled_version}.tar.gz')
+
+        spec_file.extend([
+            'License: ' + self.distribution.get_license(),
+            'Group: ' + self.group,
+            'BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-buildroot',
+            'Prefix: %{_prefix}', ])
+
+        if not self.force_arch:
+            # noarch if no extension modules
+            if not self.distribution.has_ext_modules():
+                spec_file.append('BuildArch: noarch')
+        else:
+            spec_file.append( 'BuildArch: %s' % self.force_arch )
+
+        for field in ('Vendor',
+                      'Packager',
+                      'Provides',
+                      'Requires',
+                      'Conflicts',
+                      'Obsoletes',
+                      ):
+            val = getattr(self, field.lower())
+            if isinstance(val, list):
+                spec_file.append('%s: %s' % (field, ' '.join(val)))
+            elif val is not None:
+                spec_file.append('%s: %s' % (field, val))
+
+
+        if self.distribution.get_url() != 'UNKNOWN':
+            spec_file.append('Url: ' + self.distribution.get_url())
+
+        if self.distribution_name:
+            spec_file.append('Distribution: ' + self.distribution_name)
+
+        if self.build_requires:
+            spec_file.append('BuildRequires: ' +
+                             ' '.join(self.build_requires))
+
+        if self.icon:
+            spec_file.append('Icon: ' + os.path.basename(self.icon))
+
+        if self.no_autoreq:
+            spec_file.append('AutoReq: 0')
+
+        spec_file.extend([
+            '',
+            '%description',
+            self.distribution.get_long_description()
+            ])
+
+        # put locale descriptions into spec file
+        # XXX again, suppressed because config file syntax doesn't
+        # easily support this ;-(
+        #for locale in self.descriptions.keys():
+        #    spec_file.extend([
+        #        '',
+        #        '%description -l ' + locale,
+        #        self.descriptions[locale],
+        #        ])
+
+        # rpm scripts
+        # figure out default build script
+        def_setup_call = "%s %s" % (self.python,os.path.basename(sys.argv[0]))
+        def_build = "%s build" % def_setup_call
+        if self.use_rpm_opt_flags:
+            def_build = 'env CFLAGS="$RPM_OPT_FLAGS" ' + def_build
+
+        # insert contents of files
+
+        # XXX this is kind of misleading: user-supplied options are files
+        # that we open and interpolate into the spec file, but the defaults
+        # are just text that we drop in as-is.  Hmmm.
+
+        install_cmd = ('%s install -O1 --root=$RPM_BUILD_ROOT '
+                       '--record=INSTALLED_FILES') % def_setup_call
+
+        script_options = [
+            ('prep', 'prep_script', "%setup -n %{name}-%{unmangled_version}"),
+            ('build', 'build_script', def_build),
+            ('install', 'install_script', install_cmd),
+            ('clean', 'clean_script', "rm -rf $RPM_BUILD_ROOT"),
+            ('verifyscript', 'verify_script', None),
+            ('pre', 'pre_install', None),
+            ('post', 'post_install', None),
+            ('preun', 'pre_uninstall', None),
+            ('postun', 'post_uninstall', None),
+        ]
+
+        for (rpm_opt, attr, default) in script_options:
+            # Insert contents of file referred to, if no file is referred to
+            # use 'default' as contents of script
+            val = getattr(self, attr)
+            if val or default:
+                spec_file.extend([
+                    '',
+                    '%' + rpm_opt,])
+                if val:
+                    with open(val) as f:
+                        spec_file.extend(f.read().split('\n'))
+                else:
+                    spec_file.append(default)
+
+
+        # files section
+        spec_file.extend([
+            '',
+            '%files -f INSTALLED_FILES',
+            '%defattr(-,root,root)',
+            ])
+
+        if self.doc_files:
+            spec_file.append('%doc ' + ' '.join(self.doc_files))
+
+        if self.changelog:
+            spec_file.extend([
+                '',
+                '%changelog',])
+            spec_file.extend(self.changelog)
+
+        return spec_file
+
+    def _format_changelog(self, changelog):
+        """Format the changelog correctly and convert it to a list of strings
+        """
+        if not changelog:
+            return changelog
+        new_changelog = []
+        for line in changelog.strip().split('\n'):
+            line = line.strip()
+            if line[0] == '*':
+                new_changelog.extend(['', line])
+            elif line[0] == '-':
+                new_changelog.append(line)
+            else:
+                new_changelog.append('  ' + line)
+
+        # strip trailing newline inserted by first changelog entry
+        if not new_changelog[0]:
+            del new_changelog[0]
+
+        return new_changelog

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/bdist_wininst.py

@@ -0,0 +1,377 @@
+"""distutils.command.bdist_wininst
+
+Implements the Distutils 'bdist_wininst' command: create a windows installer
+exe-program."""
+
+import os
+import sys
+import warnings
+from distutils.core import Command
+from distutils.util import get_platform
+from distutils.dir_util import remove_tree
+from distutils.errors import *
+from distutils.sysconfig import get_python_version
+from distutils import log
+
+class bdist_wininst(Command):
+
+    description = "create an executable installer for MS Windows"
+
+    user_options = [('bdist-dir=', None,
+                     "temporary directory for creating the distribution"),
+                    ('plat-name=', 'p',
+                     "platform name to embed in generated filenames "
+                     "(default: %s)" % get_platform()),
+                    ('keep-temp', 'k',
+                     "keep the pseudo-installation tree around after " +
+                     "creating the distribution archive"),
+                    ('target-version=', None,
+                     "require a specific python version" +
+                     " on the target system"),
+                    ('no-target-compile', 'c',
+                     "do not compile .py to .pyc on the target system"),
+                    ('no-target-optimize', 'o',
+                     "do not compile .py to .pyo (optimized) "
+                     "on the target system"),
+                    ('dist-dir=', 'd',
+                     "directory to put final built distributions in"),
+                    ('bitmap=', 'b',
+                     "bitmap to use for the installer instead of python-powered logo"),
+                    ('title=', 't',
+                     "title to display on the installer background instead of default"),
+                    ('skip-build', None,
+                     "skip rebuilding everything (for testing/debugging)"),
+                    ('install-script=', None,
+                     "basename of installation script to be run after "
+                     "installation or before deinstallation"),
+                    ('pre-install-script=', None,
+                     "Fully qualified filename of a script to be run before "
+                     "any files are installed.  This script need not be in the "
+                     "distribution"),
+                    ('user-access-control=', None,
+                     "specify Vista's UAC handling - 'none'/default=no "
+                     "handling, 'auto'=use UAC if target Python installed for "
+                     "all users, 'force'=always use UAC"),
+                   ]
+
+    boolean_options = ['keep-temp', 'no-target-compile', 'no-target-optimize',
+                       'skip-build']
+
+    # bpo-10945: bdist_wininst requires mbcs encoding only available on Windows
+    _unsupported = (sys.platform != "win32")
+
+    def __init__(self, *args, **kw):
+        super().__init__(*args, **kw)
+        warnings.warn("bdist_wininst command is deprecated since Python 3.8, "
+                      "use bdist_wheel (wheel packages) instead",
+                      DeprecationWarning, 2)
+
+    def initialize_options(self):
+        self.bdist_dir = None
+        self.plat_name = None
+        self.keep_temp = 0
+        self.no_target_compile = 0
+        self.no_target_optimize = 0
+        self.target_version = None
+        self.dist_dir = None
+        self.bitmap = None
+        self.title = None
+        self.skip_build = None
+        self.install_script = None
+        self.pre_install_script = None
+        self.user_access_control = None
+
+
+    def finalize_options(self):
+        self.set_undefined_options('bdist', ('skip_build', 'skip_build'))
+
+        if self.bdist_dir is None:
+            if self.skip_build and self.plat_name:
+                # If build is skipped and plat_name is overridden, bdist will
+                # not see the correct 'plat_name' - so set that up manually.
+                bdist = self.distribution.get_command_obj('bdist')
+                bdist.plat_name = self.plat_name
+                # next the command will be initialized using that name
+            bdist_base = self.get_finalized_command('bdist').bdist_base
+            self.bdist_dir = os.path.join(bdist_base, 'wininst')
+
+        if not self.target_version:
+            self.target_version = ""
+
+        if not self.skip_build and self.distribution.has_ext_modules():
+            short_version = get_python_version()
+            if self.target_version and self.target_version != short_version:
+                raise DistutilsOptionError(
+                      "target version can only be %s, or the '--skip-build'" \
+                      " option must be specified" % (short_version,))
+            self.target_version = short_version
+
+        self.set_undefined_options('bdist',
+                                   ('dist_dir', 'dist_dir'),
+                                   ('plat_name', 'plat_name'),
+                                  )
+
+        if self.install_script:
+            for script in self.distribution.scripts:
+                if self.install_script == os.path.basename(script):
+                    break
+            else:
+                raise DistutilsOptionError(
+                      "install_script '%s' not found in scripts"
+                      % self.install_script)
+
+    def run(self):
+        if (sys.platform != "win32" and
+            (self.distribution.has_ext_modules() or
+             self.distribution.has_c_libraries())):
+            raise DistutilsPlatformError \
+                  ("distribution contains extensions and/or C libraries; "
+                   "must be compiled on a Windows 32 platform")
+
+        if not self.skip_build:
+            self.run_command('build')
+
+        install = self.reinitialize_command('install', reinit_subcommands=1)
+        install.root = self.bdist_dir
+        install.skip_build = self.skip_build
+        install.warn_dir = 0
+        install.plat_name = self.plat_name
+
+        install_lib = self.reinitialize_command('install_lib')
+        # we do not want to include pyc or pyo files
+        install_lib.compile = 0
+        install_lib.optimize = 0
+
+        if self.distribution.has_ext_modules():
+            # If we are building an installer for a Python version other
+            # than the one we are currently running, then we need to ensure
+            # our build_lib reflects the other Python version rather than ours.
+            # Note that for target_version!=sys.version, we must have skipped the
+            # build step, so there is no issue with enforcing the build of this
+            # version.
+            target_version = self.target_version
+            if not target_version:
+                assert self.skip_build, "Should have already checked this"
+                target_version = '%d.%d' % sys.version_info[:2]
+            plat_specifier = ".%s-%s" % (self.plat_name, target_version)
+            build = self.get_finalized_command('build')
+            build.build_lib = os.path.join(build.build_base,
+                                           'lib' + plat_specifier)
+
+        # Use a custom scheme for the zip-file, because we have to decide
+        # at installation time which scheme to use.
+        for key in ('purelib', 'platlib', 'headers', 'scripts', 'data'):
+            value = key.upper()
+            if key == 'headers':
+                value = value + '/Include/$dist_name'
+            setattr(install,
+                    'install_' + key,
+                    value)
+
+        log.info("installing to %s", self.bdist_dir)
+        install.ensure_finalized()
+
+        # avoid warning of 'install_lib' about installing
+        # into a directory not in sys.path
+        sys.path.insert(0, os.path.join(self.bdist_dir, 'PURELIB'))
+
+        install.run()
+
+        del sys.path[0]
+
+        # And make an archive relative to the root of the
+        # pseudo-installation tree.
+        from tempfile import mktemp
+        archive_basename = mktemp()
+        fullname = self.distribution.get_fullname()
+        arcname = self.make_archive(archive_basename, "zip",
+                                    root_dir=self.bdist_dir)
+        # create an exe containing the zip-file
+        self.create_exe(arcname, fullname, self.bitmap)
+        if self.distribution.has_ext_modules():
+            pyversion = get_python_version()
+        else:
+            pyversion = 'any'
+        self.distribution.dist_files.append(('bdist_wininst', pyversion,
+                                             self.get_installer_filename(fullname)))
+        # remove the zip-file again
+        log.debug("removing temporary file '%s'", arcname)
+        os.remove(arcname)
+
+        if not self.keep_temp:
+            remove_tree(self.bdist_dir, dry_run=self.dry_run)
+
+    def get_inidata(self):
+        # Return data describing the installation.
+        lines = []
+        metadata = self.distribution.metadata
+
+        # Write the [metadata] section.
+        lines.append("[metadata]")
+
+        # 'info' will be displayed in the installer's dialog box,
+        # describing the items to be installed.
+        info = (metadata.long_description or '') + '\n'
+
+        # Escape newline characters
+        def escape(s):
+            return s.replace("\n", "\\n")
+
+        for name in ["author", "author_email", "description", "maintainer",
+                     "maintainer_email", "name", "url", "version"]:
+            data = getattr(metadata, name, "")
+            if data:
+                info = info + ("\n    %s: %s" % \
+                               (name.capitalize(), escape(data)))
+                lines.append("%s=%s" % (name, escape(data)))
+
+        # The [setup] section contains entries controlling
+        # the installer runtime.
+        lines.append("\n[Setup]")
+        if self.install_script:
+            lines.append("install_script=%s" % self.install_script)
+        lines.append("info=%s" % escape(info))
+        lines.append("target_compile=%d" % (not self.no_target_compile))
+        lines.append("target_optimize=%d" % (not self.no_target_optimize))
+        if self.target_version:
+            lines.append("target_version=%s" % self.target_version)
+        if self.user_access_control:
+            lines.append("user_access_control=%s" % self.user_access_control)
+
+        title = self.title or self.distribution.get_fullname()
+        lines.append("title=%s" % escape(title))
+        import time
+        import distutils
+        build_info = "Built %s with distutils-%s" % \
+                     (time.ctime(time.time()), distutils.__version__)
+        lines.append("build_info=%s" % build_info)
+        return "\n".join(lines)
+
+    def create_exe(self, arcname, fullname, bitmap=None):
+        import struct
+
+        self.mkpath(self.dist_dir)
+
+        cfgdata = self.get_inidata()
+
+        installer_name = self.get_installer_filename(fullname)
+        self.announce("creating %s" % installer_name)
+
+        if bitmap:
+            with open(bitmap, "rb") as f:
+                bitmapdata = f.read()
+            bitmaplen = len(bitmapdata)
+        else:
+            bitmaplen = 0
+
+        with open(installer_name, "wb") as file:
+            file.write(self.get_exe_bytes())
+            if bitmap:
+                file.write(bitmapdata)
+
+            # Convert cfgdata from unicode to ascii, mbcs encoded
+            if isinstance(cfgdata, str):
+                cfgdata = cfgdata.encode("mbcs")
+
+            # Append the pre-install script
+            cfgdata = cfgdata + b"\0"
+            if self.pre_install_script:
+                # We need to normalize newlines, so we open in text mode and
+                # convert back to bytes. "latin-1" simply avoids any possible
+                # failures.
+                with open(self.pre_install_script, "r",
+                          encoding="latin-1") as script:
+                    script_data = script.read().encode("latin-1")
+                cfgdata = cfgdata + script_data + b"\n\0"
+            else:
+                # empty pre-install script
+                cfgdata = cfgdata + b"\0"
+            file.write(cfgdata)
+
+            # The 'magic number' 0x1234567B is used to make sure that the
+            # binary layout of 'cfgdata' is what the wininst.exe binary
+            # expects.  If the layout changes, increment that number, make
+            # the corresponding changes to the wininst.exe sources, and
+            # recompile them.
+            header = struct.pack("<iii",
+                                0x1234567B,       # tag
+                                len(cfgdata),     # length
+                                bitmaplen,        # number of bytes in bitmap
+                                )
+            file.write(header)
+            with open(arcname, "rb") as f:
+                file.write(f.read())
+
+    def get_installer_filename(self, fullname):
+        # Factored out to allow overriding in subclasses
+        if self.target_version:
+            # if we create an installer for a specific python version,
+            # it's better to include this in the name
+            installer_name = os.path.join(self.dist_dir,
+                                          "%s.%s-py%s.exe" %
+                                           (fullname, self.plat_name, self.target_version))
+        else:
+            installer_name = os.path.join(self.dist_dir,
+                                          "%s.%s.exe" % (fullname, self.plat_name))
+        return installer_name
+
+    def get_exe_bytes(self):
+        # If a target-version other than the current version has been
+        # specified, then using the MSVC version from *this* build is no good.
+        # Without actually finding and executing the target version and parsing
+        # its sys.version, we just hard-code our knowledge of old versions.
+        # NOTE: Possible alternative is to allow "--target-version" to
+        # specify a Python executable rather than a simple version string.
+        # We can then execute this program to obtain any info we need, such
+        # as the real sys.version string for the build.
+        cur_version = get_python_version()
+
+        # If the target version is *later* than us, then we assume they
+        # use what we use
+        # string compares seem wrong, but are what sysconfig.py itself uses
+        if self.target_version and self.target_version < cur_version:
+            if self.target_version < "2.4":
+                bv = '6.0'
+            elif self.target_version == "2.4":
+                bv = '7.1'
+            elif self.target_version == "2.5":
+                bv = '8.0'
+            elif self.target_version <= "3.2":
+                bv = '9.0'
+            elif self.target_version <= "3.4":
+                bv = '10.0'
+            else:
+                bv = '14.0'
+        else:
+            # for current version - use authoritative check.
+            try:
+                from msvcrt import CRT_ASSEMBLY_VERSION
+            except ImportError:
+                # cross-building, so assume the latest version
+                bv = '14.0'
+            else:
+                # as far as we know, CRT is binary compatible based on
+                # the first field, so assume 'x.0' until proven otherwise
+                major = CRT_ASSEMBLY_VERSION.partition('.')[0]
+                bv = major + '.0'
+
+
+        # wininst-x.y.exe is in the same directory as this file
+        directory = os.path.dirname(__file__)
+        # we must use a wininst-x.y.exe built with the same C compiler
+        # used for python.  XXX What about mingw, borland, and so on?
+
+        # if plat_name starts with "win" but is not "win32"
+        # we want to strip "win" and leave the rest (e.g. -amd64)
+        # for all other cases, we don't want any suffix
+        if self.plat_name != 'win32' and self.plat_name[:3] == 'win':
+            sfix = self.plat_name[3:]
+        else:
+            sfix = ''
+
+        filename = os.path.join(directory, "wininst-%s%s.exe" % (bv, sfix))
+        f = open(filename, "rb")
+        try:
+            return f.read()
+        finally:
+            f.close()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/build.py

@@ -0,0 +1,157 @@
+"""distutils.command.build
+
+Implements the Distutils 'build' command."""
+
+import sys, os
+from distutils.core import Command
+from distutils.errors import DistutilsOptionError
+from distutils.util import get_platform
+
+
+def show_compilers():
+    from distutils.ccompiler import show_compilers
+    show_compilers()
+
+
+class build(Command):
+
+    description = "build everything needed to install"
+
+    user_options = [
+        ('build-base=', 'b',
+         "base directory for build library"),
+        ('build-purelib=', None,
+         "build directory for platform-neutral distributions"),
+        ('build-platlib=', None,
+         "build directory for platform-specific distributions"),
+        ('build-lib=', None,
+         "build directory for all distribution (defaults to either " +
+         "build-purelib or build-platlib"),
+        ('build-scripts=', None,
+         "build directory for scripts"),
+        ('build-temp=', 't',
+         "temporary build directory"),
+        ('plat-name=', 'p',
+         "platform name to build for, if supported "
+         "(default: %s)" % get_platform()),
+        ('compiler=', 'c',
+         "specify the compiler type"),
+        ('parallel=', 'j',
+         "number of parallel build jobs"),
+        ('debug', 'g',
+         "compile extensions and libraries with debugging information"),
+        ('force', 'f',
+         "forcibly build everything (ignore file timestamps)"),
+        ('executable=', 'e',
+         "specify final destination interpreter path (build.py)"),
+        ]
+
+    boolean_options = ['debug', 'force']
+
+    help_options = [
+        ('help-compiler', None,
+         "list available compilers", show_compilers),
+        ]
+
+    def initialize_options(self):
+        self.build_base = 'build'
+        # these are decided only after 'build_base' has its final value
+        # (unless overridden by the user or client)
+        self.build_purelib = None
+        self.build_platlib = None
+        self.build_lib = None
+        self.build_temp = None
+        self.build_scripts = None
+        self.compiler = None
+        self.plat_name = None
+        self.debug = None
+        self.force = 0
+        self.executable = None
+        self.parallel = None
+
+    def finalize_options(self):
+        if self.plat_name is None:
+            self.plat_name = get_platform()
+        else:
+            # plat-name only supported for windows (other platforms are
+            # supported via ./configure flags, if at all).  Avoid misleading
+            # other platforms.
+            if os.name != 'nt':
+                raise DistutilsOptionError(
+                            "--plat-name only supported on Windows (try "
+                            "using './configure --help' on your platform)")
+
+        plat_specifier = ".%s-%d.%d" % (self.plat_name, *sys.version_info[:2])
+
+        # Make it so Python 2.x and Python 2.x with --with-pydebug don't
+        # share the same build directories. Doing so confuses the build
+        # process for C modules
+        if hasattr(sys, 'gettotalrefcount'):
+            plat_specifier += '-pydebug'
+
+        # 'build_purelib' and 'build_platlib' just default to 'lib' and
+        # 'lib.<plat>' under the base build directory.  We only use one of
+        # them for a given distribution, though --
+        if self.build_purelib is None:
+            self.build_purelib = os.path.join(self.build_base, 'lib')
+        if self.build_platlib is None:
+            self.build_platlib = os.path.join(self.build_base,
+                                              'lib' + plat_specifier)
+
+        # 'build_lib' is the actual directory that we will use for this
+        # particular module distribution -- if user didn't supply it, pick
+        # one of 'build_purelib' or 'build_platlib'.
+        if self.build_lib is None:
+            if self.distribution.has_ext_modules():
+                self.build_lib = self.build_platlib
+            else:
+                self.build_lib = self.build_purelib
+
+        # 'build_temp' -- temporary directory for compiler turds,
+        # "build/temp.<plat>"
+        if self.build_temp is None:
+            self.build_temp = os.path.join(self.build_base,
+                                           'temp' + plat_specifier)
+        if self.build_scripts is None:
+            self.build_scripts = os.path.join(self.build_base,
+                                              'scripts-%d.%d' % sys.version_info[:2])
+
+        if self.executable is None and sys.executable:
+            self.executable = os.path.normpath(sys.executable)
+
+        if isinstance(self.parallel, str):
+            try:
+                self.parallel = int(self.parallel)
+            except ValueError:
+                raise DistutilsOptionError("parallel should be an integer")
+
+    def run(self):
+        # Run all relevant sub-commands.  This will be some subset of:
+        #  - build_py      - pure Python modules
+        #  - build_clib    - standalone C libraries
+        #  - build_ext     - Python extensions
+        #  - build_scripts - (Python) scripts
+        for cmd_name in self.get_sub_commands():
+            self.run_command(cmd_name)
+
+
+    # -- Predicates for the sub-command list ---------------------------
+
+    def has_pure_modules(self):
+        return self.distribution.has_pure_modules()
+
+    def has_c_libraries(self):
+        return self.distribution.has_c_libraries()
+
+    def has_ext_modules(self):
+        return self.distribution.has_ext_modules()
+
+    def has_scripts(self):
+        return self.distribution.has_scripts()
+
+
+    sub_commands = [('build_py',      has_pure_modules),
+                    ('build_clib',    has_c_libraries),
+                    ('build_ext',     has_ext_modules),
+                    ('build_scripts', has_scripts),
+                   ]

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/build_clib.py

@@ -0,0 +1,209 @@
+"""distutils.command.build_clib
+
+Implements the Distutils 'build_clib' command, to build a C/C++ library
+that is included in the module distribution and needed by an extension
+module."""
+
+
+# XXX this module has *lots* of code ripped-off quite transparently from
+# build_ext.py -- not surprisingly really, as the work required to build
+# a static library from a collection of C source files is not really all
+# that different from what's required to build a shared object file from
+# a collection of C source files.  Nevertheless, I haven't done the
+# necessary refactoring to account for the overlap in code between the
+# two modules, mainly because a number of subtle details changed in the
+# cut 'n paste.  Sigh.
+
+import os
+from distutils.core import Command
+from distutils.errors import *
+from distutils.sysconfig import customize_compiler
+from distutils import log
+
+def show_compilers():
+    from distutils.ccompiler import show_compilers
+    show_compilers()
+
+
+class build_clib(Command):
+
+    description = "build C/C++ libraries used by Python extensions"
+
+    user_options = [
+        ('build-clib=', 'b',
+         "directory to build C/C++ libraries to"),
+        ('build-temp=', 't',
+         "directory to put temporary build by-products"),
+        ('debug', 'g',
+         "compile with debugging information"),
+        ('force', 'f',
+         "forcibly build everything (ignore file timestamps)"),
+        ('compiler=', 'c',
+         "specify the compiler type"),
+        ]
+
+    boolean_options = ['debug', 'force']
+
+    help_options = [
+        ('help-compiler', None,
+         "list available compilers", show_compilers),
+        ]
+
+    def initialize_options(self):
+        self.build_clib = None
+        self.build_temp = None
+
+        # List of libraries to build
+        self.libraries = None
+
+        # Compilation options for all libraries
+        self.include_dirs = None
+        self.define = None
+        self.undef = None
+        self.debug = None
+        self.force = 0
+        self.compiler = None
+
+
+    def finalize_options(self):
+        # This might be confusing: both build-clib and build-temp default
+        # to build-temp as defined by the "build" command.  This is because
+        # I think that C libraries are really just temporary build
+        # by-products, at least from the point of view of building Python
+        # extensions -- but I want to keep my options open.
+        self.set_undefined_options('build',
+                                   ('build_temp', 'build_clib'),
+                                   ('build_temp', 'build_temp'),
+                                   ('compiler', 'compiler'),
+                                   ('debug', 'debug'),
+                                   ('force', 'force'))
+
+        self.libraries = self.distribution.libraries
+        if self.libraries:
+            self.check_library_list(self.libraries)
+
+        if self.include_dirs is None:
+            self.include_dirs = self.distribution.include_dirs or []
+        if isinstance(self.include_dirs, str):
+            self.include_dirs = self.include_dirs.split(os.pathsep)
+
+        # XXX same as for build_ext -- what about 'self.define' and
+        # 'self.undef' ?
+
+
+    def run(self):
+        if not self.libraries:
+            return
+
+        # Yech -- this is cut 'n pasted from build_ext.py!
+        from distutils.ccompiler import new_compiler
+        self.compiler = new_compiler(compiler=self.compiler,
+                                     dry_run=self.dry_run,
+                                     force=self.force)
+        customize_compiler(self.compiler)
+
+        if self.include_dirs is not None:
+            self.compiler.set_include_dirs(self.include_dirs)
+        if self.define is not None:
+            # 'define' option is a list of (name,value) tuples
+            for (name,value) in self.define:
+                self.compiler.define_macro(name, value)
+        if self.undef is not None:
+            for macro in self.undef:
+                self.compiler.undefine_macro(macro)
+
+        self.build_libraries(self.libraries)
+
+
+    def check_library_list(self, libraries):
+        """Ensure that the list of libraries is valid.
+
+        `library` is presumably provided as a command option 'libraries'.
+        This method checks that it is a list of 2-tuples, where the tuples
+        are (library_name, build_info_dict).
+
+        Raise DistutilsSetupError if the structure is invalid anywhere;
+        just returns otherwise.
+        """
+        if not isinstance(libraries, list):
+            raise DistutilsSetupError(
+                  "'libraries' option must be a list of tuples")
+
+        for lib in libraries:
+            if not isinstance(lib, tuple) and len(lib) != 2:
+                raise DistutilsSetupError(
+                      "each element of 'libraries' must a 2-tuple")
+
+            name, build_info = lib
+
+            if not isinstance(name, str):
+                raise DistutilsSetupError(
+                      "first element of each tuple in 'libraries' "
+                      "must be a string (the library name)")
+
+            if '/' in name or (os.sep != '/' and os.sep in name):
+                raise DistutilsSetupError("bad library name '%s': "
+                       "may not contain directory separators" % lib[0])
+
+            if not isinstance(build_info, dict):
+                raise DistutilsSetupError(
+                      "second element of each tuple in 'libraries' "
+                      "must be a dictionary (build info)")
+
+
+    def get_library_names(self):
+        # Assume the library list is valid -- 'check_library_list()' is
+        # called from 'finalize_options()', so it should be!
+        if not self.libraries:
+            return None
+
+        lib_names = []
+        for (lib_name, build_info) in self.libraries:
+            lib_names.append(lib_name)
+        return lib_names
+
+
+    def get_source_files(self):
+        self.check_library_list(self.libraries)
+        filenames = []
+        for (lib_name, build_info) in self.libraries:
+            sources = build_info.get('sources')
+            if sources is None or not isinstance(sources, (list, tuple)):
+                raise DistutilsSetupError(
+                       "in 'libraries' option (library '%s'), "
+                       "'sources' must be present and must be "
+                       "a list of source filenames" % lib_name)
+
+            filenames.extend(sources)
+        return filenames
+
+
+    def build_libraries(self, libraries):
+        for (lib_name, build_info) in libraries:
+            sources = build_info.get('sources')
+            if sources is None or not isinstance(sources, (list, tuple)):
+                raise DistutilsSetupError(
+                       "in 'libraries' option (library '%s'), "
+                       "'sources' must be present and must be "
+                       "a list of source filenames" % lib_name)
+            sources = list(sources)
+
+            log.info("building '%s' library", lib_name)
+
+            # First, compile the source code to object files in the library
+            # directory.  (This should probably change to putting object
+            # files in a temporary build directory.)
+            macros = build_info.get('macros')
+            include_dirs = build_info.get('include_dirs')
+            objects = self.compiler.compile(sources,
+                                            output_dir=self.build_temp,
+                                            macros=macros,
+                                            include_dirs=include_dirs,
+                                            debug=self.debug)
+
+            # Now "link" the object files together into a static library.
+            # (On Unix at least, this isn't really linking -- it just
+            # builds an archive.  Whatever.)
+            self.compiler.create_static_lib(objects, lib_name,
+                                            output_dir=self.build_clib,
+                                            debug=self.debug)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/build_ext.py

@@ -0,0 +1,757 @@
+"""distutils.command.build_ext
+
+Implements the Distutils 'build_ext' command, for building extension
+modules (currently limited to C extensions, should accommodate C++
+extensions ASAP)."""
+
+import contextlib
+import os
+import re
+import sys
+from distutils.core import Command
+from distutils.errors import *
+from distutils.sysconfig import customize_compiler, get_python_version
+from distutils.sysconfig import get_config_h_filename
+from distutils.dep_util import newer_group
+from distutils.extension import Extension
+from distutils.util import get_platform
+from distutils import log
+from . import py37compat
+
+from site import USER_BASE
+
+# An extension name is just a dot-separated list of Python NAMEs (ie.
+# the same as a fully-qualified module name).
+extension_name_re = re.compile \
+    (r'^[a-zA-Z_][a-zA-Z_0-9]*(\.[a-zA-Z_][a-zA-Z_0-9]*)*$')
+
+
+def show_compilers ():
+    from distutils.ccompiler import show_compilers
+    show_compilers()
+
+
+class build_ext(Command):
+
+    description = "build C/C++ extensions (compile/link to build directory)"
+
+    # XXX thoughts on how to deal with complex command-line options like
+    # these, i.e. how to make it so fancy_getopt can suck them off the
+    # command line and make it look like setup.py defined the appropriate
+    # lists of tuples of what-have-you.
+    #   - each command needs a callback to process its command-line options
+    #   - Command.__init__() needs access to its share of the whole
+    #     command line (must ultimately come from
+    #     Distribution.parse_command_line())
+    #   - it then calls the current command class' option-parsing
+    #     callback to deal with weird options like -D, which have to
+    #     parse the option text and churn out some custom data
+    #     structure
+    #   - that data structure (in this case, a list of 2-tuples)
+    #     will then be present in the command object by the time
+    #     we get to finalize_options() (i.e. the constructor
+    #     takes care of both command-line and client options
+    #     in between initialize_options() and finalize_options())
+
+    sep_by = " (separated by '%s')" % os.pathsep
+    user_options = [
+        ('build-lib=', 'b',
+         "directory for compiled extension modules"),
+        ('build-temp=', 't',
+         "directory for temporary files (build by-products)"),
+        ('plat-name=', 'p',
+         "platform name to cross-compile for, if supported "
+         "(default: %s)" % get_platform()),
+        ('inplace', 'i',
+         "ignore build-lib and put compiled extensions into the source " +
+         "directory alongside your pure Python modules"),
+        ('include-dirs=', 'I',
+         "list of directories to search for header files" + sep_by),
+        ('define=', 'D',
+         "C preprocessor macros to define"),
+        ('undef=', 'U',
+         "C preprocessor macros to undefine"),
+        ('libraries=', 'l',
+         "external C libraries to link with"),
+        ('library-dirs=', 'L',
+         "directories to search for external C libraries" + sep_by),
+        ('rpath=', 'R',
+         "directories to search for shared C libraries at runtime"),
+        ('link-objects=', 'O',
+         "extra explicit link objects to include in the link"),
+        ('debug', 'g',
+         "compile/link with debugging information"),
+        ('force', 'f',
+         "forcibly build everything (ignore file timestamps)"),
+        ('compiler=', 'c',
+         "specify the compiler type"),
+        ('parallel=', 'j',
+         "number of parallel build jobs"),
+        ('swig-cpp', None,
+         "make SWIG create C++ files (default is C)"),
+        ('swig-opts=', None,
+         "list of SWIG command line options"),
+        ('swig=', None,
+         "path to the SWIG executable"),
+        ('user', None,
+         "add user include, library and rpath")
+        ]
+
+    boolean_options = ['inplace', 'debug', 'force', 'swig-cpp', 'user']
+
+    help_options = [
+        ('help-compiler', None,
+         "list available compilers", show_compilers),
+        ]
+
+    def initialize_options(self):
+        self.extensions = None
+        self.build_lib = None
+        self.plat_name = None
+        self.build_temp = None
+        self.inplace = 0
+        self.package = None
+
+        self.include_dirs = None
+        self.define = None
+        self.undef = None
+        self.libraries = None
+        self.library_dirs = None
+        self.rpath = None
+        self.link_objects = None
+        self.debug = None
+        self.force = None
+        self.compiler = None
+        self.swig = None
+        self.swig_cpp = None
+        self.swig_opts = None
+        self.user = None
+        self.parallel = None
+
+    def finalize_options(self):
+        from distutils import sysconfig
+
+        self.set_undefined_options('build',
+                                   ('build_lib', 'build_lib'),
+                                   ('build_temp', 'build_temp'),
+                                   ('compiler', 'compiler'),
+                                   ('debug', 'debug'),
+                                   ('force', 'force'),
+                                   ('parallel', 'parallel'),
+                                   ('plat_name', 'plat_name'),
+                                   )
+
+        if self.package is None:
+            self.package = self.distribution.ext_package
+
+        self.extensions = self.distribution.ext_modules
+
+        # Make sure Python's include directories (for Python.h, pyconfig.h,
+        # etc.) are in the include search path.
+        py_include = sysconfig.get_python_inc()
+        plat_py_include = sysconfig.get_python_inc(plat_specific=1)
+        if self.include_dirs is None:
+            self.include_dirs = self.distribution.include_dirs or []
+        if isinstance(self.include_dirs, str):
+            self.include_dirs = self.include_dirs.split(os.pathsep)
+
+        # If in a virtualenv, add its include directory
+        # Issue 16116
+        if sys.exec_prefix != sys.base_exec_prefix:
+            self.include_dirs.append(os.path.join(sys.exec_prefix, 'include'))
+
+        # Put the Python "system" include dir at the end, so that
+        # any local include dirs take precedence.
+        self.include_dirs.extend(py_include.split(os.path.pathsep))
+        if plat_py_include != py_include:
+            self.include_dirs.extend(
+                plat_py_include.split(os.path.pathsep))
+
+        self.ensure_string_list('libraries')
+        self.ensure_string_list('link_objects')
+
+        # Life is easier if we're not forever checking for None, so
+        # simplify these options to empty lists if unset
+        if self.libraries is None:
+            self.libraries = []
+        if self.library_dirs is None:
+            self.library_dirs = []
+        elif isinstance(self.library_dirs, str):
+            self.library_dirs = self.library_dirs.split(os.pathsep)
+
+        if self.rpath is None:
+            self.rpath = []
+        elif isinstance(self.rpath, str):
+            self.rpath = self.rpath.split(os.pathsep)
+
+        # for extensions under windows use different directories
+        # for Release and Debug builds.
+        # also Python's library directory must be appended to library_dirs
+        if os.name == 'nt':
+            # the 'libs' directory is for binary installs - we assume that
+            # must be the *native* platform.  But we don't really support
+            # cross-compiling via a binary install anyway, so we let it go.
+            self.library_dirs.append(os.path.join(sys.exec_prefix, 'libs'))
+            if sys.base_exec_prefix != sys.prefix:  # Issue 16116
+                self.library_dirs.append(os.path.join(sys.base_exec_prefix, 'libs'))
+            if self.debug:
+                self.build_temp = os.path.join(self.build_temp, "Debug")
+            else:
+                self.build_temp = os.path.join(self.build_temp, "Release")
+
+            # Append the source distribution include and library directories,
+            # this allows distutils on windows to work in the source tree
+            self.include_dirs.append(os.path.dirname(get_config_h_filename()))
+            _sys_home = getattr(sys, '_home', None)
+            if _sys_home:
+                self.library_dirs.append(_sys_home)
+
+            # Use the .lib files for the correct architecture
+            if self.plat_name == 'win32':
+                suffix = 'win32'
+            else:
+                # win-amd64
+                suffix = self.plat_name[4:]
+            new_lib = os.path.join(sys.exec_prefix, 'PCbuild')
+            if suffix:
+                new_lib = os.path.join(new_lib, suffix)
+            self.library_dirs.append(new_lib)
+
+        # For extensions under Cygwin, Python's library directory must be
+        # appended to library_dirs
+        if sys.platform[:6] == 'cygwin':
+            if sys.executable.startswith(os.path.join(sys.exec_prefix, "bin")):
+                # building third party extensions
+                self.library_dirs.append(os.path.join(sys.prefix, "lib",
+                                                      "python" + get_python_version(),
+                                                      "config"))
+            else:
+                # building python standard extensions
+                self.library_dirs.append('.')
+
+        # For building extensions with a shared Python library,
+        # Python's library directory must be appended to library_dirs
+        # See Issues: #1600860, #4366
+        if (sysconfig.get_config_var('Py_ENABLE_SHARED')):
+            if not sysconfig.python_build:
+                # building third party extensions
+                self.library_dirs.append(sysconfig.get_config_var('LIBDIR'))
+            else:
+                # building python standard extensions
+                self.library_dirs.append('.')
+
+        # The argument parsing will result in self.define being a string, but
+        # it has to be a list of 2-tuples.  All the preprocessor symbols
+        # specified by the 'define' option will be set to '1'.  Multiple
+        # symbols can be separated with commas.
+
+        if self.define:
+            defines = self.define.split(',')
+            self.define = [(symbol, '1') for symbol in defines]
+
+        # The option for macros to undefine is also a string from the
+        # option parsing, but has to be a list.  Multiple symbols can also
+        # be separated with commas here.
+        if self.undef:
+            self.undef = self.undef.split(',')
+
+        if self.swig_opts is None:
+            self.swig_opts = []
+        else:
+            self.swig_opts = self.swig_opts.split(' ')
+
+        # Finally add the user include and library directories if requested
+        if self.user:
+            user_include = os.path.join(USER_BASE, "include")
+            user_lib = os.path.join(USER_BASE, "lib")
+            if os.path.isdir(user_include):
+                self.include_dirs.append(user_include)
+            if os.path.isdir(user_lib):
+                self.library_dirs.append(user_lib)
+                self.rpath.append(user_lib)
+
+        if isinstance(self.parallel, str):
+            try:
+                self.parallel = int(self.parallel)
+            except ValueError:
+                raise DistutilsOptionError("parallel should be an integer")
+
+    def run(self):
+        from distutils.ccompiler import new_compiler
+
+        # 'self.extensions', as supplied by setup.py, is a list of
+        # Extension instances.  See the documentation for Extension (in
+        # distutils.extension) for details.
+        #
+        # For backwards compatibility with Distutils 0.8.2 and earlier, we
+        # also allow the 'extensions' list to be a list of tuples:
+        #    (ext_name, build_info)
+        # where build_info is a dictionary containing everything that
+        # Extension instances do except the name, with a few things being
+        # differently named.  We convert these 2-tuples to Extension
+        # instances as needed.
+
+        if not self.extensions:
+            return
+
+        # If we were asked to build any C/C++ libraries, make sure that the
+        # directory where we put them is in the library search path for
+        # linking extensions.
+        if self.distribution.has_c_libraries():
+            build_clib = self.get_finalized_command('build_clib')
+            self.libraries.extend(build_clib.get_library_names() or [])
+            self.library_dirs.append(build_clib.build_clib)
+
+        # Setup the CCompiler object that we'll use to do all the
+        # compiling and linking
+        self.compiler = new_compiler(compiler=self.compiler,
+                                     verbose=self.verbose,
+                                     dry_run=self.dry_run,
+                                     force=self.force)
+        customize_compiler(self.compiler)
+        # If we are cross-compiling, init the compiler now (if we are not
+        # cross-compiling, init would not hurt, but people may rely on
+        # late initialization of compiler even if they shouldn't...)
+        if os.name == 'nt' and self.plat_name != get_platform():
+            self.compiler.initialize(self.plat_name)
+
+        # And make sure that any compile/link-related options (which might
+        # come from the command-line or from the setup script) are set in
+        # that CCompiler object -- that way, they automatically apply to
+        # all compiling and linking done here.
+        if self.include_dirs is not None:
+            self.compiler.set_include_dirs(self.include_dirs)
+        if self.define is not None:
+            # 'define' option is a list of (name,value) tuples
+            for (name, value) in self.define:
+                self.compiler.define_macro(name, value)
+        if self.undef is not None:
+            for macro in self.undef:
+                self.compiler.undefine_macro(macro)
+        if self.libraries is not None:
+            self.compiler.set_libraries(self.libraries)
+        if self.library_dirs is not None:
+            self.compiler.set_library_dirs(self.library_dirs)
+        if self.rpath is not None:
+            self.compiler.set_runtime_library_dirs(self.rpath)
+        if self.link_objects is not None:
+            self.compiler.set_link_objects(self.link_objects)
+
+        # Now actually compile and link everything.
+        self.build_extensions()
+
+    def check_extensions_list(self, extensions):
+        """Ensure that the list of extensions (presumably provided as a
+        command option 'extensions') is valid, i.e. it is a list of
+        Extension objects.  We also support the old-style list of 2-tuples,
+        where the tuples are (ext_name, build_info), which are converted to
+        Extension instances here.
+
+        Raise DistutilsSetupError if the structure is invalid anywhere;
+        just returns otherwise.
+        """
+        if not isinstance(extensions, list):
+            raise DistutilsSetupError(
+                  "'ext_modules' option must be a list of Extension instances")
+
+        for i, ext in enumerate(extensions):
+            if isinstance(ext, Extension):
+                continue                # OK! (assume type-checking done
+                                        # by Extension constructor)
+
+            if not isinstance(ext, tuple) or len(ext) != 2:
+                raise DistutilsSetupError(
+                       "each element of 'ext_modules' option must be an "
+                       "Extension instance or 2-tuple")
+
+            ext_name, build_info = ext
+
+            log.warn("old-style (ext_name, build_info) tuple found in "
+                     "ext_modules for extension '%s' "
+                     "-- please convert to Extension instance", ext_name)
+
+            if not (isinstance(ext_name, str) and
+                    extension_name_re.match(ext_name)):
+                raise DistutilsSetupError(
+                       "first element of each tuple in 'ext_modules' "
+                       "must be the extension name (a string)")
+
+            if not isinstance(build_info, dict):
+                raise DistutilsSetupError(
+                       "second element of each tuple in 'ext_modules' "
+                       "must be a dictionary (build info)")
+
+            # OK, the (ext_name, build_info) dict is type-safe: convert it
+            # to an Extension instance.
+            ext = Extension(ext_name, build_info['sources'])
+
+            # Easy stuff: one-to-one mapping from dict elements to
+            # instance attributes.
+            for key in ('include_dirs', 'library_dirs', 'libraries',
+                        'extra_objects', 'extra_compile_args',
+                        'extra_link_args'):
+                val = build_info.get(key)
+                if val is not None:
+                    setattr(ext, key, val)
+
+            # Medium-easy stuff: same syntax/semantics, different names.
+            ext.runtime_library_dirs = build_info.get('rpath')
+            if 'def_file' in build_info:
+                log.warn("'def_file' element of build info dict "
+                         "no longer supported")
+
+            # Non-trivial stuff: 'macros' split into 'define_macros'
+            # and 'undef_macros'.
+            macros = build_info.get('macros')
+            if macros:
+                ext.define_macros = []
+                ext.undef_macros = []
+                for macro in macros:
+                    if not (isinstance(macro, tuple) and len(macro) in (1, 2)):
+                        raise DistutilsSetupError(
+                              "'macros' element of build info dict "
+                              "must be 1- or 2-tuple")
+                    if len(macro) == 1:
+                        ext.undef_macros.append(macro[0])
+                    elif len(macro) == 2:
+                        ext.define_macros.append(macro)
+
+            extensions[i] = ext
+
+    def get_source_files(self):
+        self.check_extensions_list(self.extensions)
+        filenames = []
+
+        # Wouldn't it be neat if we knew the names of header files too...
+        for ext in self.extensions:
+            filenames.extend(ext.sources)
+        return filenames
+
+    def get_outputs(self):
+        # Sanity check the 'extensions' list -- can't assume this is being
+        # done in the same run as a 'build_extensions()' call (in fact, we
+        # can probably assume that it *isn't*!).
+        self.check_extensions_list(self.extensions)
+
+        # And build the list of output (built) filenames.  Note that this
+        # ignores the 'inplace' flag, and assumes everything goes in the
+        # "build" tree.
+        outputs = []
+        for ext in self.extensions:
+            outputs.append(self.get_ext_fullpath(ext.name))
+        return outputs
+
+    def build_extensions(self):
+        # First, sanity-check the 'extensions' list
+        self.check_extensions_list(self.extensions)
+        if self.parallel:
+            self._build_extensions_parallel()
+        else:
+            self._build_extensions_serial()
+
+    def _build_extensions_parallel(self):
+        workers = self.parallel
+        if self.parallel is True:
+            workers = os.cpu_count()  # may return None
+        try:
+            from concurrent.futures import ThreadPoolExecutor
+        except ImportError:
+            workers = None
+
+        if workers is None:
+            self._build_extensions_serial()
+            return
+
+        with ThreadPoolExecutor(max_workers=workers) as executor:
+            futures = [executor.submit(self.build_extension, ext)
+                       for ext in self.extensions]
+            for ext, fut in zip(self.extensions, futures):
+                with self._filter_build_errors(ext):
+                    fut.result()
+
+    def _build_extensions_serial(self):
+        for ext in self.extensions:
+            with self._filter_build_errors(ext):
+                self.build_extension(ext)
+
+    @contextlib.contextmanager
+    def _filter_build_errors(self, ext):
+        try:
+            yield
+        except (CCompilerError, DistutilsError, CompileError) as e:
+            if not ext.optional:
+                raise
+            self.warn('building extension "%s" failed: %s' %
+                      (ext.name, e))
+
+    def build_extension(self, ext):
+        sources = ext.sources
+        if sources is None or not isinstance(sources, (list, tuple)):
+            raise DistutilsSetupError(
+                  "in 'ext_modules' option (extension '%s'), "
+                  "'sources' must be present and must be "
+                  "a list of source filenames" % ext.name)
+        # sort to make the resulting .so file build reproducible
+        sources = sorted(sources)
+
+        ext_path = self.get_ext_fullpath(ext.name)
+        depends = sources + ext.depends
+        if not (self.force or newer_group(depends, ext_path, 'newer')):
+            log.debug("skipping '%s' extension (up-to-date)", ext.name)
+            return
+        else:
+            log.info("building '%s' extension", ext.name)
+
+        # First, scan the sources for SWIG definition files (.i), run
+        # SWIG on 'em to create .c files, and modify the sources list
+        # accordingly.
+        sources = self.swig_sources(sources, ext)
+
+        # Next, compile the source code to object files.
+
+        # XXX not honouring 'define_macros' or 'undef_macros' -- the
+        # CCompiler API needs to change to accommodate this, and I
+        # want to do one thing at a time!
+
+        # Two possible sources for extra compiler arguments:
+        #   - 'extra_compile_args' in Extension object
+        #   - CFLAGS environment variable (not particularly
+        #     elegant, but people seem to expect it and I
+        #     guess it's useful)
+        # The environment variable should take precedence, and
+        # any sensible compiler will give precedence to later
+        # command line args.  Hence we combine them in order:
+        extra_args = ext.extra_compile_args or []
+
+        macros = ext.define_macros[:]
+        for undef in ext.undef_macros:
+            macros.append((undef,))
+
+        objects = self.compiler.compile(sources,
+                                         output_dir=self.build_temp,
+                                         macros=macros,
+                                         include_dirs=ext.include_dirs,
+                                         debug=self.debug,
+                                         extra_postargs=extra_args,
+                                         depends=ext.depends)
+
+        # XXX outdated variable, kept here in case third-part code
+        # needs it.
+        self._built_objects = objects[:]
+
+        # Now link the object files together into a "shared object" --
+        # of course, first we have to figure out all the other things
+        # that go into the mix.
+        if ext.extra_objects:
+            objects.extend(ext.extra_objects)
+        extra_args = ext.extra_link_args or []
+
+        # Detect target language, if not provided
+        language = ext.language or self.compiler.detect_language(sources)
+
+        self.compiler.link_shared_object(
+            objects, ext_path,
+            libraries=self.get_libraries(ext),
+            library_dirs=ext.library_dirs,
+            runtime_library_dirs=ext.runtime_library_dirs,
+            extra_postargs=extra_args,
+            export_symbols=self.get_export_symbols(ext),
+            debug=self.debug,
+            build_temp=self.build_temp,
+            target_lang=language)
+
+    def swig_sources(self, sources, extension):
+        """Walk the list of source files in 'sources', looking for SWIG
+        interface (.i) files.  Run SWIG on all that are found, and
+        return a modified 'sources' list with SWIG source files replaced
+        by the generated C (or C++) files.
+        """
+        new_sources = []
+        swig_sources = []
+        swig_targets = {}
+
+        # XXX this drops generated C/C++ files into the source tree, which
+        # is fine for developers who want to distribute the generated
+        # source -- but there should be an option to put SWIG output in
+        # the temp dir.
+
+        if self.swig_cpp:
+            log.warn("--swig-cpp is deprecated - use --swig-opts=-c++")
+
+        if self.swig_cpp or ('-c++' in self.swig_opts) or \
+           ('-c++' in extension.swig_opts):
+            target_ext = '.cpp'
+        else:
+            target_ext = '.c'
+
+        for source in sources:
+            (base, ext) = os.path.splitext(source)
+            if ext == ".i":             # SWIG interface file
+                new_sources.append(base + '_wrap' + target_ext)
+                swig_sources.append(source)
+                swig_targets[source] = new_sources[-1]
+            else:
+                new_sources.append(source)
+
+        if not swig_sources:
+            return new_sources
+
+        swig = self.swig or self.find_swig()
+        swig_cmd = [swig, "-python"]
+        swig_cmd.extend(self.swig_opts)
+        if self.swig_cpp:
+            swig_cmd.append("-c++")
+
+        # Do not override commandline arguments
+        if not self.swig_opts:
+            for o in extension.swig_opts:
+                swig_cmd.append(o)
+
+        for source in swig_sources:
+            target = swig_targets[source]
+            log.info("swigging %s to %s", source, target)
+            self.spawn(swig_cmd + ["-o", target, source])
+
+        return new_sources
+
+    def find_swig(self):
+        """Return the name of the SWIG executable.  On Unix, this is
+        just "swig" -- it should be in the PATH.  Tries a bit harder on
+        Windows.
+        """
+        if os.name == "posix":
+            return "swig"
+        elif os.name == "nt":
+            # Look for SWIG in its standard installation directory on
+            # Windows (or so I presume!).  If we find it there, great;
+            # if not, act like Unix and assume it's in the PATH.
+            for vers in ("1.3", "1.2", "1.1"):
+                fn = os.path.join("c:\\swig%s" % vers, "swig.exe")
+                if os.path.isfile(fn):
+                    return fn
+            else:
+                return "swig.exe"
+        else:
+            raise DistutilsPlatformError(
+                  "I don't know how to find (much less run) SWIG "
+                  "on platform '%s'" % os.name)
+
+    # -- Name generators -----------------------------------------------
+    # (extension names, filenames, whatever)
+    def get_ext_fullpath(self, ext_name):
+        """Returns the path of the filename for a given extension.
+
+        The file is located in `build_lib` or directly in the package
+        (inplace option).
+        """
+        fullname = self.get_ext_fullname(ext_name)
+        modpath = fullname.split('.')
+        filename = self.get_ext_filename(modpath[-1])
+
+        if not self.inplace:
+            # no further work needed
+            # returning :
+            #   build_dir/package/path/filename
+            filename = os.path.join(*modpath[:-1]+[filename])
+            return os.path.join(self.build_lib, filename)
+
+        # the inplace option requires to find the package directory
+        # using the build_py command for that
+        package = '.'.join(modpath[0:-1])
+        build_py = self.get_finalized_command('build_py')
+        package_dir = os.path.abspath(build_py.get_package_dir(package))
+
+        # returning
+        #   package_dir/filename
+        return os.path.join(package_dir, filename)
+
+    def get_ext_fullname(self, ext_name):
+        """Returns the fullname of a given extension name.
+
+        Adds the `package.` prefix"""
+        if self.package is None:
+            return ext_name
+        else:
+            return self.package + '.' + ext_name
+
+    def get_ext_filename(self, ext_name):
+        r"""Convert the name of an extension (eg. "foo.bar") into the name
+        of the file from which it will be loaded (eg. "foo/bar.so", or
+        "foo\bar.pyd").
+        """
+        from distutils.sysconfig import get_config_var
+        ext_path = ext_name.split('.')
+        ext_suffix = get_config_var('EXT_SUFFIX')
+        return os.path.join(*ext_path) + ext_suffix
+
+    def get_export_symbols(self, ext):
+        """Return the list of symbols that a shared extension has to
+        export.  This either uses 'ext.export_symbols' or, if it's not
+        provided, "PyInit_" + module_name.  Only relevant on Windows, where
+        the .pyd file (DLL) must export the module "PyInit_" function.
+        """
+        name = ext.name.split('.')[-1]
+        try:
+            # Unicode module name support as defined in PEP-489
+            # https://www.python.org/dev/peps/pep-0489/#export-hook-name
+            name.encode('ascii')
+        except UnicodeEncodeError:
+            suffix = 'U_' + name.encode('punycode').replace(b'-', b'_').decode('ascii')
+        else:
+            suffix = "_" + name
+
+        initfunc_name = "PyInit" + suffix
+        if initfunc_name not in ext.export_symbols:
+            ext.export_symbols.append(initfunc_name)
+        return ext.export_symbols
+
+    def get_libraries(self, ext):
+        """Return the list of libraries to link against when building a
+        shared extension.  On most platforms, this is just 'ext.libraries';
+        on Windows, we add the Python library (eg. python20.dll).
+        """
+        # The python library is always needed on Windows.  For MSVC, this
+        # is redundant, since the library is mentioned in a pragma in
+        # pyconfig.h that MSVC groks.  The other Windows compilers all seem
+        # to need it mentioned explicitly, though, so that's what we do.
+        # Append '_d' to the python import library on debug builds.
+        if sys.platform == "win32":
+            from distutils._msvccompiler import MSVCCompiler
+            if not isinstance(self.compiler, MSVCCompiler):
+                template = "python%d%d"
+                if self.debug:
+                    template = template + '_d'
+                pythonlib = (template %
+                       (sys.hexversion >> 24, (sys.hexversion >> 16) & 0xff))
+                # don't extend ext.libraries, it may be shared with other
+                # extensions, it is a reference to the original list
+                return ext.libraries + [pythonlib]
+        else:
+            # On Android only the main executable and LD_PRELOADs are considered
+            # to be RTLD_GLOBAL, all the dependencies of the main executable
+            # remain RTLD_LOCAL and so the shared libraries must be linked with
+            # libpython when python is built with a shared python library (issue
+            # bpo-21536).
+            # On Cygwin (and if required, other POSIX-like platforms based on
+            # Windows like MinGW) it is simply necessary that all symbols in
+            # shared libraries are resolved at link time.
+            from distutils.sysconfig import get_config_var
+            link_libpython = False
+            if get_config_var('Py_ENABLE_SHARED'):
+                # A native build on an Android device or on Cygwin
+                if hasattr(sys, 'getandroidapilevel'):
+                    link_libpython = True
+                elif sys.platform == 'cygwin':
+                    link_libpython = True
+                elif '_PYTHON_HOST_PLATFORM' in os.environ:
+                    # We are cross-compiling for one of the relevant platforms
+                    if get_config_var('ANDROID_API_LEVEL') != 0:
+                        link_libpython = True
+                    elif get_config_var('MACHDEP') == 'cygwin':
+                        link_libpython = True
+
+            if link_libpython:
+                ldversion = get_config_var('LDVERSION')
+                return ext.libraries + ['python' + ldversion]
+
+        return ext.libraries + py37compat.pythonlib()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/build_py.py

@@ -0,0 +1,416 @@
+"""distutils.command.build_py
+
+Implements the Distutils 'build_py' command."""
+
+import os
+import importlib.util
+import sys
+import glob
+
+from distutils.core import Command
+from distutils.errors import *
+from distutils.util import convert_path, Mixin2to3
+from distutils import log
+
+class build_py (Command):
+
+    description = "\"build\" pure Python modules (copy to build directory)"
+
+    user_options = [
+        ('build-lib=', 'd', "directory to \"build\" (copy) to"),
+        ('compile', 'c', "compile .py to .pyc"),
+        ('no-compile', None, "don't compile .py files [default]"),
+        ('optimize=', 'O',
+         "also compile with optimization: -O1 for \"python -O\", "
+         "-O2 for \"python -OO\", and -O0 to disable [default: -O0]"),
+        ('force', 'f', "forcibly build everything (ignore file timestamps)"),
+        ]
+
+    boolean_options = ['compile', 'force']
+    negative_opt = {'no-compile' : 'compile'}
+
+    def initialize_options(self):
+        self.build_lib = None
+        self.py_modules = None
+        self.package = None
+        self.package_data = None
+        self.package_dir = None
+        self.compile = 0
+        self.optimize = 0
+        self.force = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build',
+                                   ('build_lib', 'build_lib'),
+                                   ('force', 'force'))
+
+        # Get the distribution options that are aliases for build_py
+        # options -- list of packages and list of modules.
+        self.packages = self.distribution.packages
+        self.py_modules = self.distribution.py_modules
+        self.package_data = self.distribution.package_data
+        self.package_dir = {}
+        if self.distribution.package_dir:
+            for name, path in self.distribution.package_dir.items():
+                self.package_dir[name] = convert_path(path)
+        self.data_files = self.get_data_files()
+
+        # Ick, copied straight from install_lib.py (fancy_getopt needs a
+        # type system!  Hell, *everything* needs a type system!!!)
+        if not isinstance(self.optimize, int):
+            try:
+                self.optimize = int(self.optimize)
+                assert 0 <= self.optimize <= 2
+            except (ValueError, AssertionError):
+                raise DistutilsOptionError("optimize must be 0, 1, or 2")
+
+    def run(self):
+        # XXX copy_file by default preserves atime and mtime.  IMHO this is
+        # the right thing to do, but perhaps it should be an option -- in
+        # particular, a site administrator might want installed files to
+        # reflect the time of installation rather than the last
+        # modification time before the installed release.
+
+        # XXX copy_file by default preserves mode, which appears to be the
+        # wrong thing to do: if a file is read-only in the working
+        # directory, we want it to be installed read/write so that the next
+        # installation of the same module distribution can overwrite it
+        # without problems.  (This might be a Unix-specific issue.)  Thus
+        # we turn off 'preserve_mode' when copying to the build directory,
+        # since the build directory is supposed to be exactly what the
+        # installation will look like (ie. we preserve mode when
+        # installing).
+
+        # Two options control which modules will be installed: 'packages'
+        # and 'py_modules'.  The former lets us work with whole packages, not
+        # specifying individual modules at all; the latter is for
+        # specifying modules one-at-a-time.
+
+        if self.py_modules:
+            self.build_modules()
+        if self.packages:
+            self.build_packages()
+            self.build_package_data()
+
+        self.byte_compile(self.get_outputs(include_bytecode=0))
+
+    def get_data_files(self):
+        """Generate list of '(package,src_dir,build_dir,filenames)' tuples"""
+        data = []
+        if not self.packages:
+            return data
+        for package in self.packages:
+            # Locate package source directory
+            src_dir = self.get_package_dir(package)
+
+            # Compute package build directory
+            build_dir = os.path.join(*([self.build_lib] + package.split('.')))
+
+            # Length of path to strip from found files
+            plen = 0
+            if src_dir:
+                plen = len(src_dir)+1
+
+            # Strip directory from globbed filenames
+            filenames = [
+                file[plen:] for file in self.find_data_files(package, src_dir)
+                ]
+            data.append((package, src_dir, build_dir, filenames))
+        return data
+
+    def find_data_files(self, package, src_dir):
+        """Return filenames for package's data files in 'src_dir'"""
+        globs = (self.package_data.get('', [])
+                 + self.package_data.get(package, []))
+        files = []
+        for pattern in globs:
+            # Each pattern has to be converted to a platform-specific path
+            filelist = glob.glob(os.path.join(glob.escape(src_dir), convert_path(pattern)))
+            # Files that match more than one pattern are only added once
+            files.extend([fn for fn in filelist if fn not in files
+                and os.path.isfile(fn)])
+        return files
+
+    def build_package_data(self):
+        """Copy data files into build directory"""
+        lastdir = None
+        for package, src_dir, build_dir, filenames in self.data_files:
+            for filename in filenames:
+                target = os.path.join(build_dir, filename)
+                self.mkpath(os.path.dirname(target))
+                self.copy_file(os.path.join(src_dir, filename), target,
+                               preserve_mode=False)
+
+    def get_package_dir(self, package):
+        """Return the directory, relative to the top of the source
+           distribution, where package 'package' should be found
+           (at least according to the 'package_dir' option, if any)."""
+        path = package.split('.')
+
+        if not self.package_dir:
+            if path:
+                return os.path.join(*path)
+            else:
+                return ''
+        else:
+            tail = []
+            while path:
+                try:
+                    pdir = self.package_dir['.'.join(path)]
+                except KeyError:
+                    tail.insert(0, path[-1])
+                    del path[-1]
+                else:
+                    tail.insert(0, pdir)
+                    return os.path.join(*tail)
+            else:
+                # Oops, got all the way through 'path' without finding a
+                # match in package_dir.  If package_dir defines a directory
+                # for the root (nameless) package, then fallback on it;
+                # otherwise, we might as well have not consulted
+                # package_dir at all, as we just use the directory implied
+                # by 'tail' (which should be the same as the original value
+                # of 'path' at this point).
+                pdir = self.package_dir.get('')
+                if pdir is not None:
+                    tail.insert(0, pdir)
+
+                if tail:
+                    return os.path.join(*tail)
+                else:
+                    return ''
+
+    def check_package(self, package, package_dir):
+        # Empty dir name means current directory, which we can probably
+        # assume exists.  Also, os.path.exists and isdir don't know about
+        # my "empty string means current dir" convention, so we have to
+        # circumvent them.
+        if package_dir != "":
+            if not os.path.exists(package_dir):
+                raise DistutilsFileError(
+                      "package directory '%s' does not exist" % package_dir)
+            if not os.path.isdir(package_dir):
+                raise DistutilsFileError(
+                       "supposed package directory '%s' exists, "
+                       "but is not a directory" % package_dir)
+
+        # Require __init__.py for all but the "root package"
+        if package:
+            init_py = os.path.join(package_dir, "__init__.py")
+            if os.path.isfile(init_py):
+                return init_py
+            else:
+                log.warn(("package init file '%s' not found " +
+                          "(or not a regular file)"), init_py)
+
+        # Either not in a package at all (__init__.py not expected), or
+        # __init__.py doesn't exist -- so don't return the filename.
+        return None
+
+    def check_module(self, module, module_file):
+        if not os.path.isfile(module_file):
+            log.warn("file %s (for module %s) not found", module_file, module)
+            return False
+        else:
+            return True
+
+    def find_package_modules(self, package, package_dir):
+        self.check_package(package, package_dir)
+        module_files = glob.glob(os.path.join(glob.escape(package_dir), "*.py"))
+        modules = []
+        setup_script = os.path.abspath(self.distribution.script_name)
+
+        for f in module_files:
+            abs_f = os.path.abspath(f)
+            if abs_f != setup_script:
+                module = os.path.splitext(os.path.basename(f))[0]
+                modules.append((package, module, f))
+            else:
+                self.debug_print("excluding %s" % setup_script)
+        return modules
+
+    def find_modules(self):
+        """Finds individually-specified Python modules, ie. those listed by
+        module name in 'self.py_modules'.  Returns a list of tuples (package,
+        module_base, filename): 'package' is a tuple of the path through
+        package-space to the module; 'module_base' is the bare (no
+        packages, no dots) module name, and 'filename' is the path to the
+        ".py" file (relative to the distribution root) that implements the
+        module.
+        """
+        # Map package names to tuples of useful info about the package:
+        #    (package_dir, checked)
+        # package_dir - the directory where we'll find source files for
+        #   this package
+        # checked - true if we have checked that the package directory
+        #   is valid (exists, contains __init__.py, ... ?)
+        packages = {}
+
+        # List of (package, module, filename) tuples to return
+        modules = []
+
+        # We treat modules-in-packages almost the same as toplevel modules,
+        # just the "package" for a toplevel is empty (either an empty
+        # string or empty list, depending on context).  Differences:
+        #   - don't check for __init__.py in directory for empty package
+        for module in self.py_modules:
+            path = module.split('.')
+            package = '.'.join(path[0:-1])
+            module_base = path[-1]
+
+            try:
+                (package_dir, checked) = packages[package]
+            except KeyError:
+                package_dir = self.get_package_dir(package)
+                checked = 0
+
+            if not checked:
+                init_py = self.check_package(package, package_dir)
+                packages[package] = (package_dir, 1)
+                if init_py:
+                    modules.append((package, "__init__", init_py))
+
+            # XXX perhaps we should also check for just .pyc files
+            # (so greedy closed-source bastards can distribute Python
+            # modules too)
+            module_file = os.path.join(package_dir, module_base + ".py")
+            if not self.check_module(module, module_file):
+                continue
+
+            modules.append((package, module_base, module_file))
+
+        return modules
+
+    def find_all_modules(self):
+        """Compute the list of all modules that will be built, whether
+        they are specified one-module-at-a-time ('self.py_modules') or
+        by whole packages ('self.packages').  Return a list of tuples
+        (package, module, module_file), just like 'find_modules()' and
+        'find_package_modules()' do."""
+        modules = []
+        if self.py_modules:
+            modules.extend(self.find_modules())
+        if self.packages:
+            for package in self.packages:
+                package_dir = self.get_package_dir(package)
+                m = self.find_package_modules(package, package_dir)
+                modules.extend(m)
+        return modules
+
+    def get_source_files(self):
+        return [module[-1] for module in self.find_all_modules()]
+
+    def get_module_outfile(self, build_dir, package, module):
+        outfile_path = [build_dir] + list(package) + [module + ".py"]
+        return os.path.join(*outfile_path)
+
+    def get_outputs(self, include_bytecode=1):
+        modules = self.find_all_modules()
+        outputs = []
+        for (package, module, module_file) in modules:
+            package = package.split('.')
+            filename = self.get_module_outfile(self.build_lib, package, module)
+            outputs.append(filename)
+            if include_bytecode:
+                if self.compile:
+                    outputs.append(importlib.util.cache_from_source(
+                        filename, optimization=''))
+                if self.optimize > 0:
+                    outputs.append(importlib.util.cache_from_source(
+                        filename, optimization=self.optimize))
+
+        outputs += [
+            os.path.join(build_dir, filename)
+            for package, src_dir, build_dir, filenames in self.data_files
+            for filename in filenames
+            ]
+
+        return outputs
+
+    def build_module(self, module, module_file, package):
+        if isinstance(package, str):
+            package = package.split('.')
+        elif not isinstance(package, (list, tuple)):
+            raise TypeError(
+                  "'package' must be a string (dot-separated), list, or tuple")
+
+        # Now put the module source file into the "build" area -- this is
+        # easy, we just copy it somewhere under self.build_lib (the build
+        # directory for Python source).
+        outfile = self.get_module_outfile(self.build_lib, package, module)
+        dir = os.path.dirname(outfile)
+        self.mkpath(dir)
+        return self.copy_file(module_file, outfile, preserve_mode=0)
+
+    def build_modules(self):
+        modules = self.find_modules()
+        for (package, module, module_file) in modules:
+            # Now "build" the module -- ie. copy the source file to
+            # self.build_lib (the build directory for Python source).
+            # (Actually, it gets copied to the directory for this package
+            # under self.build_lib.)
+            self.build_module(module, module_file, package)
+
+    def build_packages(self):
+        for package in self.packages:
+            # Get list of (package, module, module_file) tuples based on
+            # scanning the package directory.  'package' is only included
+            # in the tuple so that 'find_modules()' and
+            # 'find_package_tuples()' have a consistent interface; it's
+            # ignored here (apart from a sanity check).  Also, 'module' is
+            # the *unqualified* module name (ie. no dots, no package -- we
+            # already know its package!), and 'module_file' is the path to
+            # the .py file, relative to the current directory
+            # (ie. including 'package_dir').
+            package_dir = self.get_package_dir(package)
+            modules = self.find_package_modules(package, package_dir)
+
+            # Now loop over the modules we found, "building" each one (just
+            # copy it to self.build_lib).
+            for (package_, module, module_file) in modules:
+                assert package == package_
+                self.build_module(module, module_file, package)
+
+    def byte_compile(self, files):
+        if sys.dont_write_bytecode:
+            self.warn('byte-compiling is disabled, skipping.')
+            return
+
+        from distutils.util import byte_compile
+        prefix = self.build_lib
+        if prefix[-1] != os.sep:
+            prefix = prefix + os.sep
+
+        # XXX this code is essentially the same as the 'byte_compile()
+        # method of the "install_lib" command, except for the determination
+        # of the 'prefix' string.  Hmmm.
+        if self.compile:
+            byte_compile(files, optimize=0,
+                         force=self.force, prefix=prefix, dry_run=self.dry_run)
+        if self.optimize > 0:
+            byte_compile(files, optimize=self.optimize,
+                         force=self.force, prefix=prefix, dry_run=self.dry_run)
+
+class build_py_2to3(build_py, Mixin2to3):
+    def run(self):
+        self.updated_files = []
+
+        # Base class code
+        if self.py_modules:
+            self.build_modules()
+        if self.packages:
+            self.build_packages()
+            self.build_package_data()
+
+        # 2to3
+        self.run_2to3(self.updated_files)
+
+        # Remaining base class code
+        self.byte_compile(self.get_outputs(include_bytecode=0))
+
+    def build_module(self, module, module_file, package):
+        res = build_py.build_module(self, module, module_file, package)
+        if res[1]:
+            # file was copied
+            self.updated_files.append(res[0])
+        return res

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/build_scripts.py

@@ -0,0 +1,160 @@
+"""distutils.command.build_scripts
+
+Implements the Distutils 'build_scripts' command."""
+
+import os, re
+from stat import ST_MODE
+from distutils import sysconfig
+from distutils.core import Command
+from distutils.dep_util import newer
+from distutils.util import convert_path, Mixin2to3
+from distutils import log
+import tokenize
+
+# check if Python is called on the first line with this expression
+first_line_re = re.compile(b'^#!.*python[0-9.]*([ \t].*)?$')
+
+class build_scripts(Command):
+
+    description = "\"build\" scripts (copy and fixup #! line)"
+
+    user_options = [
+        ('build-dir=', 'd', "directory to \"build\" (copy) to"),
+        ('force', 'f', "forcibly build everything (ignore file timestamps"),
+        ('executable=', 'e', "specify final destination interpreter path"),
+        ]
+
+    boolean_options = ['force']
+
+
+    def initialize_options(self):
+        self.build_dir = None
+        self.scripts = None
+        self.force = None
+        self.executable = None
+        self.outfiles = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build',
+                                   ('build_scripts', 'build_dir'),
+                                   ('force', 'force'),
+                                   ('executable', 'executable'))
+        self.scripts = self.distribution.scripts
+
+    def get_source_files(self):
+        return self.scripts
+
+    def run(self):
+        if not self.scripts:
+            return
+        self.copy_scripts()
+
+
+    def copy_scripts(self):
+        r"""Copy each script listed in 'self.scripts'; if it's marked as a
+        Python script in the Unix way (first line matches 'first_line_re',
+        ie. starts with "\#!" and contains "python"), then adjust the first
+        line to refer to the current Python interpreter as we copy.
+        """
+        self.mkpath(self.build_dir)
+        outfiles = []
+        updated_files = []
+        for script in self.scripts:
+            adjust = False
+            script = convert_path(script)
+            outfile = os.path.join(self.build_dir, os.path.basename(script))
+            outfiles.append(outfile)
+
+            if not self.force and not newer(script, outfile):
+                log.debug("not copying %s (up-to-date)", script)
+                continue
+
+            # Always open the file, but ignore failures in dry-run mode --
+            # that way, we'll get accurate feedback if we can read the
+            # script.
+            try:
+                f = open(script, "rb")
+            except OSError:
+                if not self.dry_run:
+                    raise
+                f = None
+            else:
+                encoding, lines = tokenize.detect_encoding(f.readline)
+                f.seek(0)
+                first_line = f.readline()
+                if not first_line:
+                    self.warn("%s is an empty file (skipping)" % script)
+                    continue
+
+                match = first_line_re.match(first_line)
+                if match:
+                    adjust = True
+                    post_interp = match.group(1) or b''
+
+            if adjust:
+                log.info("copying and adjusting %s -> %s", script,
+                         self.build_dir)
+                updated_files.append(outfile)
+                if not self.dry_run:
+                    if not sysconfig.python_build:
+                        executable = self.executable
+                    else:
+                        executable = os.path.join(
+                            sysconfig.get_config_var("BINDIR"),
+                           "python%s%s" % (sysconfig.get_config_var("VERSION"),
+                                           sysconfig.get_config_var("EXE")))
+                    executable = os.fsencode(executable)
+                    shebang = b"#!" + executable + post_interp + b"\n"
+                    # Python parser starts to read a script using UTF-8 until
+                    # it gets a #coding:xxx cookie. The shebang has to be the
+                    # first line of a file, the #coding:xxx cookie cannot be
+                    # written before. So the shebang has to be decodable from
+                    # UTF-8.
+                    try:
+                        shebang.decode('utf-8')
+                    except UnicodeDecodeError:
+                        raise ValueError(
+                            "The shebang ({!r}) is not decodable "
+                            "from utf-8".format(shebang))
+                    # If the script is encoded to a custom encoding (use a
+                    # #coding:xxx cookie), the shebang has to be decodable from
+                    # the script encoding too.
+                    try:
+                        shebang.decode(encoding)
+                    except UnicodeDecodeError:
+                        raise ValueError(
+                            "The shebang ({!r}) is not decodable "
+                            "from the script encoding ({})"
+                            .format(shebang, encoding))
+                    with open(outfile, "wb") as outf:
+                        outf.write(shebang)
+                        outf.writelines(f.readlines())
+                if f:
+                    f.close()
+            else:
+                if f:
+                    f.close()
+                updated_files.append(outfile)
+                self.copy_file(script, outfile)
+
+        if os.name == 'posix':
+            for file in outfiles:
+                if self.dry_run:
+                    log.info("changing mode of %s", file)
+                else:
+                    oldmode = os.stat(file)[ST_MODE] & 0o7777
+                    newmode = (oldmode | 0o555) & 0o7777
+                    if newmode != oldmode:
+                        log.info("changing mode of %s from %o to %o",
+                                 file, oldmode, newmode)
+                        os.chmod(file, newmode)
+        # XXX should we modify self.outfiles?
+        return outfiles, updated_files
+
+class build_scripts_2to3(build_scripts, Mixin2to3):
+
+    def copy_scripts(self):
+        outfiles, updated_files = build_scripts.copy_scripts(self)
+        if not self.dry_run:
+            self.run_2to3(updated_files)
+        return outfiles, updated_files

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/check.py

@@ -0,0 +1,148 @@
+"""distutils.command.check
+
+Implements the Distutils 'check' command.
+"""
+from distutils.core import Command
+from distutils.errors import DistutilsSetupError
+
+try:
+    # docutils is installed
+    from docutils.utils import Reporter
+    from docutils.parsers.rst import Parser
+    from docutils import frontend
+    from docutils import nodes
+
+    class SilentReporter(Reporter):
+
+        def __init__(self, source, report_level, halt_level, stream=None,
+                     debug=0, encoding='ascii', error_handler='replace'):
+            self.messages = []
+            Reporter.__init__(self, source, report_level, halt_level, stream,
+                              debug, encoding, error_handler)
+
+        def system_message(self, level, message, *children, **kwargs):
+            self.messages.append((level, message, children, kwargs))
+            return nodes.system_message(message, level=level,
+                                        type=self.levels[level],
+                                        *children, **kwargs)
+
+    HAS_DOCUTILS = True
+except Exception:
+    # Catch all exceptions because exceptions besides ImportError probably
+    # indicate that docutils is not ported to Py3k.
+    HAS_DOCUTILS = False
+
+class check(Command):
+    """This command checks the meta-data of the package.
+    """
+    description = ("perform some checks on the package")
+    user_options = [('metadata', 'm', 'Verify meta-data'),
+                    ('restructuredtext', 'r',
+                     ('Checks if long string meta-data syntax '
+                      'are reStructuredText-compliant')),
+                    ('strict', 's',
+                     'Will exit with an error if a check fails')]
+
+    boolean_options = ['metadata', 'restructuredtext', 'strict']
+
+    def initialize_options(self):
+        """Sets default values for options."""
+        self.restructuredtext = 0
+        self.metadata = 1
+        self.strict = 0
+        self._warnings = 0
+
+    def finalize_options(self):
+        pass
+
+    def warn(self, msg):
+        """Counts the number of warnings that occurs."""
+        self._warnings += 1
+        return Command.warn(self, msg)
+
+    def run(self):
+        """Runs the command."""
+        # perform the various tests
+        if self.metadata:
+            self.check_metadata()
+        if self.restructuredtext:
+            if HAS_DOCUTILS:
+                self.check_restructuredtext()
+            elif self.strict:
+                raise DistutilsSetupError('The docutils package is needed.')
+
+        # let's raise an error in strict mode, if we have at least
+        # one warning
+        if self.strict and self._warnings > 0:
+            raise DistutilsSetupError('Please correct your package.')
+
+    def check_metadata(self):
+        """Ensures that all required elements of meta-data are supplied.
+
+        Required fields:
+            name, version, URL
+
+        Recommended fields:
+            (author and author_email) or (maintainer and maintainer_email))
+
+        Warns if any are missing.
+        """
+        metadata = self.distribution.metadata
+
+        missing = []
+        for attr in ('name', 'version', 'url'):
+            if not (hasattr(metadata, attr) and getattr(metadata, attr)):
+                missing.append(attr)
+
+        if missing:
+            self.warn("missing required meta-data: %s"  % ', '.join(missing))
+        if metadata.author:
+            if not metadata.author_email:
+                self.warn("missing meta-data: if 'author' supplied, " +
+                          "'author_email' should be supplied too")
+        elif metadata.maintainer:
+            if not metadata.maintainer_email:
+                self.warn("missing meta-data: if 'maintainer' supplied, " +
+                          "'maintainer_email' should be supplied too")
+        else:
+            self.warn("missing meta-data: either (author and author_email) " +
+                      "or (maintainer and maintainer_email) " +
+                      "should be supplied")
+
+    def check_restructuredtext(self):
+        """Checks if the long string fields are reST-compliant."""
+        data = self.distribution.get_long_description()
+        for warning in self._check_rst_data(data):
+            line = warning[-1].get('line')
+            if line is None:
+                warning = warning[1]
+            else:
+                warning = '%s (line %s)' % (warning[1], line)
+            self.warn(warning)
+
+    def _check_rst_data(self, data):
+        """Returns warnings when the provided data doesn't compile."""
+        # the include and csv_table directives need this to be a path
+        source_path = self.distribution.script_name or 'setup.py'
+        parser = Parser()
+        settings = frontend.OptionParser(components=(Parser,)).get_default_values()
+        settings.tab_width = 4
+        settings.pep_references = None
+        settings.rfc_references = None
+        reporter = SilentReporter(source_path,
+                          settings.report_level,
+                          settings.halt_level,
+                          stream=settings.warning_stream,
+                          debug=settings.debug,
+                          encoding=settings.error_encoding,
+                          error_handler=settings.error_encoding_error_handler)
+
+        document = nodes.document(settings, reporter, source=source_path)
+        document.note_source(source_path, -1)
+        try:
+            parser.parse(data, document)
+        except AttributeError as e:
+            reporter.messages.append(
+                (-1, 'Could not finish the parsing: %s.' % e, '', {}))
+
+        return reporter.messages

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/clean.py

@@ -0,0 +1,76 @@
+"""distutils.command.clean
+
+Implements the Distutils 'clean' command."""
+
+# contributed by Bastian Kleineidam <calvin@cs.uni-sb.de>, added 2000-03-18
+
+import os
+from distutils.core import Command
+from distutils.dir_util import remove_tree
+from distutils import log
+
+class clean(Command):
+
+    description = "clean up temporary files from 'build' command"
+    user_options = [
+        ('build-base=', 'b',
+         "base build directory (default: 'build.build-base')"),
+        ('build-lib=', None,
+         "build directory for all modules (default: 'build.build-lib')"),
+        ('build-temp=', 't',
+         "temporary build directory (default: 'build.build-temp')"),
+        ('build-scripts=', None,
+         "build directory for scripts (default: 'build.build-scripts')"),
+        ('bdist-base=', None,
+         "temporary directory for built distributions"),
+        ('all', 'a',
+         "remove all build output, not just temporary by-products")
+    ]
+
+    boolean_options = ['all']
+
+    def initialize_options(self):
+        self.build_base = None
+        self.build_lib = None
+        self.build_temp = None
+        self.build_scripts = None
+        self.bdist_base = None
+        self.all = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build',
+                                   ('build_base', 'build_base'),
+                                   ('build_lib', 'build_lib'),
+                                   ('build_scripts', 'build_scripts'),
+                                   ('build_temp', 'build_temp'))
+        self.set_undefined_options('bdist',
+                                   ('bdist_base', 'bdist_base'))
+
+    def run(self):
+        # remove the build/temp.<plat> directory (unless it's already
+        # gone)
+        if os.path.exists(self.build_temp):
+            remove_tree(self.build_temp, dry_run=self.dry_run)
+        else:
+            log.debug("'%s' does not exist -- can't clean it",
+                      self.build_temp)
+
+        if self.all:
+            # remove build directories
+            for directory in (self.build_lib,
+                              self.bdist_base,
+                              self.build_scripts):
+                if os.path.exists(directory):
+                    remove_tree(directory, dry_run=self.dry_run)
+                else:
+                    log.warn("'%s' does not exist -- can't clean it",
+                             directory)
+
+        # just for the heck of it, try to remove the base build directory:
+        # we might have emptied it right now, but if not we don't care
+        if not self.dry_run:
+            try:
+                os.rmdir(self.build_base)
+                log.info("removing '%s'", self.build_base)
+            except OSError:
+                pass

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/config.py

@@ -0,0 +1,344 @@
+"""distutils.command.config
+
+Implements the Distutils 'config' command, a (mostly) empty command class
+that exists mainly to be sub-classed by specific module distributions and
+applications.  The idea is that while every "config" command is different,
+at least they're all named the same, and users always see "config" in the
+list of standard commands.  Also, this is a good place to put common
+configure-like tasks: "try to compile this C code", or "figure out where
+this header file lives".
+"""
+
+import os, re
+
+from distutils.core import Command
+from distutils.errors import DistutilsExecError
+from distutils.sysconfig import customize_compiler
+from distutils import log
+
+LANG_EXT = {"c": ".c", "c++": ".cxx"}
+
+class config(Command):
+
+    description = "prepare to build"
+
+    user_options = [
+        ('compiler=', None,
+         "specify the compiler type"),
+        ('cc=', None,
+         "specify the compiler executable"),
+        ('include-dirs=', 'I',
+         "list of directories to search for header files"),
+        ('define=', 'D',
+         "C preprocessor macros to define"),
+        ('undef=', 'U',
+         "C preprocessor macros to undefine"),
+        ('libraries=', 'l',
+         "external C libraries to link with"),
+        ('library-dirs=', 'L',
+         "directories to search for external C libraries"),
+
+        ('noisy', None,
+         "show every action (compile, link, run, ...) taken"),
+        ('dump-source', None,
+         "dump generated source files before attempting to compile them"),
+        ]
+
+
+    # The three standard command methods: since the "config" command
+    # does nothing by default, these are empty.
+
+    def initialize_options(self):
+        self.compiler = None
+        self.cc = None
+        self.include_dirs = None
+        self.libraries = None
+        self.library_dirs = None
+
+        # maximal output for now
+        self.noisy = 1
+        self.dump_source = 1
+
+        # list of temporary files generated along-the-way that we have
+        # to clean at some point
+        self.temp_files = []
+
+    def finalize_options(self):
+        if self.include_dirs is None:
+            self.include_dirs = self.distribution.include_dirs or []
+        elif isinstance(self.include_dirs, str):
+            self.include_dirs = self.include_dirs.split(os.pathsep)
+
+        if self.libraries is None:
+            self.libraries = []
+        elif isinstance(self.libraries, str):
+            self.libraries = [self.libraries]
+
+        if self.library_dirs is None:
+            self.library_dirs = []
+        elif isinstance(self.library_dirs, str):
+            self.library_dirs = self.library_dirs.split(os.pathsep)
+
+    def run(self):
+        pass
+
+    # Utility methods for actual "config" commands.  The interfaces are
+    # loosely based on Autoconf macros of similar names.  Sub-classes
+    # may use these freely.
+
+    def _check_compiler(self):
+        """Check that 'self.compiler' really is a CCompiler object;
+        if not, make it one.
+        """
+        # We do this late, and only on-demand, because this is an expensive
+        # import.
+        from distutils.ccompiler import CCompiler, new_compiler
+        if not isinstance(self.compiler, CCompiler):
+            self.compiler = new_compiler(compiler=self.compiler,
+                                         dry_run=self.dry_run, force=1)
+            customize_compiler(self.compiler)
+            if self.include_dirs:
+                self.compiler.set_include_dirs(self.include_dirs)
+            if self.libraries:
+                self.compiler.set_libraries(self.libraries)
+            if self.library_dirs:
+                self.compiler.set_library_dirs(self.library_dirs)
+
+    def _gen_temp_sourcefile(self, body, headers, lang):
+        filename = "_configtest" + LANG_EXT[lang]
+        with open(filename, "w") as file:
+            if headers:
+                for header in headers:
+                    file.write("#include <%s>\n" % header)
+                file.write("\n")
+            file.write(body)
+            if body[-1] != "\n":
+                file.write("\n")
+        return filename
+
+    def _preprocess(self, body, headers, include_dirs, lang):
+        src = self._gen_temp_sourcefile(body, headers, lang)
+        out = "_configtest.i"
+        self.temp_files.extend([src, out])
+        self.compiler.preprocess(src, out, include_dirs=include_dirs)
+        return (src, out)
+
+    def _compile(self, body, headers, include_dirs, lang):
+        src = self._gen_temp_sourcefile(body, headers, lang)
+        if self.dump_source:
+            dump_file(src, "compiling '%s':" % src)
+        (obj,) = self.compiler.object_filenames([src])
+        self.temp_files.extend([src, obj])
+        self.compiler.compile([src], include_dirs=include_dirs)
+        return (src, obj)
+
+    def _link(self, body, headers, include_dirs, libraries, library_dirs,
+              lang):
+        (src, obj) = self._compile(body, headers, include_dirs, lang)
+        prog = os.path.splitext(os.path.basename(src))[0]
+        self.compiler.link_executable([obj], prog,
+                                      libraries=libraries,
+                                      library_dirs=library_dirs,
+                                      target_lang=lang)
+
+        if self.compiler.exe_extension is not None:
+            prog = prog + self.compiler.exe_extension
+        self.temp_files.append(prog)
+
+        return (src, obj, prog)
+
+    def _clean(self, *filenames):
+        if not filenames:
+            filenames = self.temp_files
+            self.temp_files = []
+        log.info("removing: %s", ' '.join(filenames))
+        for filename in filenames:
+            try:
+                os.remove(filename)
+            except OSError:
+                pass
+
+
+    # XXX these ignore the dry-run flag: what to do, what to do? even if
+    # you want a dry-run build, you still need some sort of configuration
+    # info.  My inclination is to make it up to the real config command to
+    # consult 'dry_run', and assume a default (minimal) configuration if
+    # true.  The problem with trying to do it here is that you'd have to
+    # return either true or false from all the 'try' methods, neither of
+    # which is correct.
+
+    # XXX need access to the header search path and maybe default macros.
+
+    def try_cpp(self, body=None, headers=None, include_dirs=None, lang="c"):
+        """Construct a source file from 'body' (a string containing lines
+        of C/C++ code) and 'headers' (a list of header files to include)
+        and run it through the preprocessor.  Return true if the
+        preprocessor succeeded, false if there were any errors.
+        ('body' probably isn't of much use, but what the heck.)
+        """
+        from distutils.ccompiler import CompileError
+        self._check_compiler()
+        ok = True
+        try:
+            self._preprocess(body, headers, include_dirs, lang)
+        except CompileError:
+            ok = False
+
+        self._clean()
+        return ok
+
+    def search_cpp(self, pattern, body=None, headers=None, include_dirs=None,
+                   lang="c"):
+        """Construct a source file (just like 'try_cpp()'), run it through
+        the preprocessor, and return true if any line of the output matches
+        'pattern'.  'pattern' should either be a compiled regex object or a
+        string containing a regex.  If both 'body' and 'headers' are None,
+        preprocesses an empty file -- which can be useful to determine the
+        symbols the preprocessor and compiler set by default.
+        """
+        self._check_compiler()
+        src, out = self._preprocess(body, headers, include_dirs, lang)
+
+        if isinstance(pattern, str):
+            pattern = re.compile(pattern)
+
+        with open(out) as file:
+            match = False
+            while True:
+                line = file.readline()
+                if line == '':
+                    break
+                if pattern.search(line):
+                    match = True
+                    break
+
+        self._clean()
+        return match
+
+    def try_compile(self, body, headers=None, include_dirs=None, lang="c"):
+        """Try to compile a source file built from 'body' and 'headers'.
+        Return true on success, false otherwise.
+        """
+        from distutils.ccompiler import CompileError
+        self._check_compiler()
+        try:
+            self._compile(body, headers, include_dirs, lang)
+            ok = True
+        except CompileError:
+            ok = False
+
+        log.info(ok and "success!" or "failure.")
+        self._clean()
+        return ok
+
+    def try_link(self, body, headers=None, include_dirs=None, libraries=None,
+                 library_dirs=None, lang="c"):
+        """Try to compile and link a source file, built from 'body' and
+        'headers', to executable form.  Return true on success, false
+        otherwise.
+        """
+        from distutils.ccompiler import CompileError, LinkError
+        self._check_compiler()
+        try:
+            self._link(body, headers, include_dirs,
+                       libraries, library_dirs, lang)
+            ok = True
+        except (CompileError, LinkError):
+            ok = False
+
+        log.info(ok and "success!" or "failure.")
+        self._clean()
+        return ok
+
+    def try_run(self, body, headers=None, include_dirs=None, libraries=None,
+                library_dirs=None, lang="c"):
+        """Try to compile, link to an executable, and run a program
+        built from 'body' and 'headers'.  Return true on success, false
+        otherwise.
+        """
+        from distutils.ccompiler import CompileError, LinkError
+        self._check_compiler()
+        try:
+            src, obj, exe = self._link(body, headers, include_dirs,
+                                       libraries, library_dirs, lang)
+            self.spawn([exe])
+            ok = True
+        except (CompileError, LinkError, DistutilsExecError):
+            ok = False
+
+        log.info(ok and "success!" or "failure.")
+        self._clean()
+        return ok
+
+
+    # -- High-level methods --------------------------------------------
+    # (these are the ones that are actually likely to be useful
+    # when implementing a real-world config command!)
+
+    def check_func(self, func, headers=None, include_dirs=None,
+                   libraries=None, library_dirs=None, decl=0, call=0):
+        """Determine if function 'func' is available by constructing a
+        source file that refers to 'func', and compiles and links it.
+        If everything succeeds, returns true; otherwise returns false.
+
+        The constructed source file starts out by including the header
+        files listed in 'headers'.  If 'decl' is true, it then declares
+        'func' (as "int func()"); you probably shouldn't supply 'headers'
+        and set 'decl' true in the same call, or you might get errors about
+        a conflicting declarations for 'func'.  Finally, the constructed
+        'main()' function either references 'func' or (if 'call' is true)
+        calls it.  'libraries' and 'library_dirs' are used when
+        linking.
+        """
+        self._check_compiler()
+        body = []
+        if decl:
+            body.append("int %s ();" % func)
+        body.append("int main () {")
+        if call:
+            body.append("  %s();" % func)
+        else:
+            body.append("  %s;" % func)
+        body.append("}")
+        body = "\n".join(body) + "\n"
+
+        return self.try_link(body, headers, include_dirs,
+                             libraries, library_dirs)
+
+    def check_lib(self, library, library_dirs=None, headers=None,
+                  include_dirs=None, other_libraries=[]):
+        """Determine if 'library' is available to be linked against,
+        without actually checking that any particular symbols are provided
+        by it.  'headers' will be used in constructing the source file to
+        be compiled, but the only effect of this is to check if all the
+        header files listed are available.  Any libraries listed in
+        'other_libraries' will be included in the link, in case 'library'
+        has symbols that depend on other libraries.
+        """
+        self._check_compiler()
+        return self.try_link("int main (void) { }", headers, include_dirs,
+                             [library] + other_libraries, library_dirs)
+
+    def check_header(self, header, include_dirs=None, library_dirs=None,
+                     lang="c"):
+        """Determine if the system header file named by 'header_file'
+        exists and can be found by the preprocessor; return true if so,
+        false otherwise.
+        """
+        return self.try_cpp(body="/* No body */", headers=[header],
+                            include_dirs=include_dirs)
+
+def dump_file(filename, head=None):
+    """Dumps a file content into log.info.
+
+    If head is not None, will be dumped before the file content.
+    """
+    if head is None:
+        log.info('%s', filename)
+    else:
+        log.info(head)
+    file = open(filename)
+    try:
+        log.info(file.read())
+    finally:
+        file.close()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/install.py

@@ -0,0 +1,677 @@
+"""distutils.command.install
+
+Implements the Distutils 'install' command."""
+
+import sys
+import os
+
+from distutils import log
+from distutils.core import Command
+from distutils.debug import DEBUG
+from distutils.sysconfig import get_config_vars
+from distutils.errors import DistutilsPlatformError
+from distutils.file_util import write_file
+from distutils.util import convert_path, subst_vars, change_root
+from distutils.util import get_platform
+from distutils.errors import DistutilsOptionError
+
+from site import USER_BASE
+from site import USER_SITE
+HAS_USER_SITE = True
+
+WINDOWS_SCHEME = {
+    'purelib': '$base/Lib/site-packages',
+    'platlib': '$base/Lib/site-packages',
+    'headers': '$base/Include/$dist_name',
+    'scripts': '$base/Scripts',
+    'data'   : '$base',
+}
+
+INSTALL_SCHEMES = {
+    'unix_prefix': {
+        'purelib': '$base/lib/python$py_version_short/site-packages',
+        'platlib': '$platbase/$platlibdir/python$py_version_short/site-packages',
+        'headers': '$base/include/python$py_version_short$abiflags/$dist_name',
+        'scripts': '$base/bin',
+        'data'   : '$base',
+        },
+    'unix_home': {
+        'purelib': '$base/lib/python',
+        'platlib': '$base/$platlibdir/python',
+        'headers': '$base/include/python/$dist_name',
+        'scripts': '$base/bin',
+        'data'   : '$base',
+        },
+    'nt': WINDOWS_SCHEME,
+    'pypy': {
+        'purelib': '$base/site-packages',
+        'platlib': '$base/site-packages',
+        'headers': '$base/include/$dist_name',
+        'scripts': '$base/bin',
+        'data'   : '$base',
+        },
+    'pypy_nt': {
+        'purelib': '$base/site-packages',
+        'platlib': '$base/site-packages',
+        'headers': '$base/include/$dist_name',
+        'scripts': '$base/Scripts',
+        'data'   : '$base',
+        },
+    }
+
+# user site schemes
+if HAS_USER_SITE:
+    INSTALL_SCHEMES['nt_user'] = {
+        'purelib': '$usersite',
+        'platlib': '$usersite',
+        'headers': '$userbase/Python$py_version_nodot/Include/$dist_name',
+        'scripts': '$userbase/Python$py_version_nodot/Scripts',
+        'data'   : '$userbase',
+        }
+
+    INSTALL_SCHEMES['unix_user'] = {
+        'purelib': '$usersite',
+        'platlib': '$usersite',
+        'headers':
+            '$userbase/include/python$py_version_short$abiflags/$dist_name',
+        'scripts': '$userbase/bin',
+        'data'   : '$userbase',
+        }
+
+# The keys to an installation scheme; if any new types of files are to be
+# installed, be sure to add an entry to every installation scheme above,
+# and to SCHEME_KEYS here.
+SCHEME_KEYS = ('purelib', 'platlib', 'headers', 'scripts', 'data')
+
+
+class install(Command):
+
+    description = "install everything from build directory"
+
+    user_options = [
+        # Select installation scheme and set base director(y|ies)
+        ('prefix=', None,
+         "installation prefix"),
+        ('exec-prefix=', None,
+         "(Unix only) prefix for platform-specific files"),
+        ('home=', None,
+         "(Unix only) home directory to install under"),
+
+        # Or, just set the base director(y|ies)
+        ('install-base=', None,
+         "base installation directory (instead of --prefix or --home)"),
+        ('install-platbase=', None,
+         "base installation directory for platform-specific files " +
+         "(instead of --exec-prefix or --home)"),
+        ('root=', None,
+         "install everything relative to this alternate root directory"),
+
+        # Or, explicitly set the installation scheme
+        ('install-purelib=', None,
+         "installation directory for pure Python module distributions"),
+        ('install-platlib=', None,
+         "installation directory for non-pure module distributions"),
+        ('install-lib=', None,
+         "installation directory for all module distributions " +
+         "(overrides --install-purelib and --install-platlib)"),
+
+        ('install-headers=', None,
+         "installation directory for C/C++ headers"),
+        ('install-scripts=', None,
+         "installation directory for Python scripts"),
+        ('install-data=', None,
+         "installation directory for data files"),
+
+        # Byte-compilation options -- see install_lib.py for details, as
+        # these are duplicated from there (but only install_lib does
+        # anything with them).
+        ('compile', 'c', "compile .py to .pyc [default]"),
+        ('no-compile', None, "don't compile .py files"),
+        ('optimize=', 'O',
+         "also compile with optimization: -O1 for \"python -O\", "
+         "-O2 for \"python -OO\", and -O0 to disable [default: -O0]"),
+
+        # Miscellaneous control options
+        ('force', 'f',
+         "force installation (overwrite any existing files)"),
+        ('skip-build', None,
+         "skip rebuilding everything (for testing/debugging)"),
+
+        # Where to install documentation (eventually!)
+        #('doc-format=', None, "format of documentation to generate"),
+        #('install-man=', None, "directory for Unix man pages"),
+        #('install-html=', None, "directory for HTML documentation"),
+        #('install-info=', None, "directory for GNU info files"),
+
+        ('record=', None,
+         "filename in which to record list of installed files"),
+        ]
+
+    boolean_options = ['compile', 'force', 'skip-build']
+
+    if HAS_USER_SITE:
+        user_options.append(('user', None,
+                             "install in user site-package '%s'" % USER_SITE))
+        boolean_options.append('user')
+
+    negative_opt = {'no-compile' : 'compile'}
+
+
+    def initialize_options(self):
+        """Initializes options."""
+        # High-level options: these select both an installation base
+        # and scheme.
+        self.prefix = None
+        self.exec_prefix = None
+        self.home = None
+        self.user = 0
+
+        # These select only the installation base; it's up to the user to
+        # specify the installation scheme (currently, that means supplying
+        # the --install-{platlib,purelib,scripts,data} options).
+        self.install_base = None
+        self.install_platbase = None
+        self.root = None
+
+        # These options are the actual installation directories; if not
+        # supplied by the user, they are filled in using the installation
+        # scheme implied by prefix/exec-prefix/home and the contents of
+        # that installation scheme.
+        self.install_purelib = None     # for pure module distributions
+        self.install_platlib = None     # non-pure (dists w/ extensions)
+        self.install_headers = None     # for C/C++ headers
+        self.install_lib = None         # set to either purelib or platlib
+        self.install_scripts = None
+        self.install_data = None
+        self.install_userbase = USER_BASE
+        self.install_usersite = USER_SITE
+
+        self.compile = None
+        self.optimize = None
+
+        # Deprecated
+        # These two are for putting non-packagized distributions into their
+        # own directory and creating a .pth file if it makes sense.
+        # 'extra_path' comes from the setup file; 'install_path_file' can
+        # be turned off if it makes no sense to install a .pth file.  (But
+        # better to install it uselessly than to guess wrong and not
+        # install it when it's necessary and would be used!)  Currently,
+        # 'install_path_file' is always true unless some outsider meddles
+        # with it.
+        self.extra_path = None
+        self.install_path_file = 1
+
+        # 'force' forces installation, even if target files are not
+        # out-of-date.  'skip_build' skips running the "build" command,
+        # handy if you know it's not necessary.  'warn_dir' (which is *not*
+        # a user option, it's just there so the bdist_* commands can turn
+        # it off) determines whether we warn about installing to a
+        # directory not in sys.path.
+        self.force = 0
+        self.skip_build = 0
+        self.warn_dir = 1
+
+        # These are only here as a conduit from the 'build' command to the
+        # 'install_*' commands that do the real work.  ('build_base' isn't
+        # actually used anywhere, but it might be useful in future.)  They
+        # are not user options, because if the user told the install
+        # command where the build directory is, that wouldn't affect the
+        # build command.
+        self.build_base = None
+        self.build_lib = None
+
+        # Not defined yet because we don't know anything about
+        # documentation yet.
+        #self.install_man = None
+        #self.install_html = None
+        #self.install_info = None
+
+        self.record = None
+
+
+    # -- Option finalizing methods -------------------------------------
+    # (This is rather more involved than for most commands,
+    # because this is where the policy for installing third-
+    # party Python modules on various platforms given a wide
+    # array of user input is decided.  Yes, it's quite complex!)
+
+    def finalize_options(self):
+        """Finalizes options."""
+        # This method (and its helpers, like 'finalize_unix()',
+        # 'finalize_other()', and 'select_scheme()') is where the default
+        # installation directories for modules, extension modules, and
+        # anything else we care to install from a Python module
+        # distribution.  Thus, this code makes a pretty important policy
+        # statement about how third-party stuff is added to a Python
+        # installation!  Note that the actual work of installation is done
+        # by the relatively simple 'install_*' commands; they just take
+        # their orders from the installation directory options determined
+        # here.
+
+        # Check for errors/inconsistencies in the options; first, stuff
+        # that's wrong on any platform.
+
+        if ((self.prefix or self.exec_prefix or self.home) and
+            (self.install_base or self.install_platbase)):
+            raise DistutilsOptionError(
+                   "must supply either prefix/exec-prefix/home or " +
+                   "install-base/install-platbase -- not both")
+
+        if self.home and (self.prefix or self.exec_prefix):
+            raise DistutilsOptionError(
+                  "must supply either home or prefix/exec-prefix -- not both")
+
+        if self.user and (self.prefix or self.exec_prefix or self.home or
+                self.install_base or self.install_platbase):
+            raise DistutilsOptionError("can't combine user with prefix, "
+                                       "exec_prefix/home, or install_(plat)base")
+
+        # Next, stuff that's wrong (or dubious) only on certain platforms.
+        if os.name != "posix":
+            if self.exec_prefix:
+                self.warn("exec-prefix option ignored on this platform")
+                self.exec_prefix = None
+
+        # Now the interesting logic -- so interesting that we farm it out
+        # to other methods.  The goal of these methods is to set the final
+        # values for the install_{lib,scripts,data,...}  options, using as
+        # input a heady brew of prefix, exec_prefix, home, install_base,
+        # install_platbase, user-supplied versions of
+        # install_{purelib,platlib,lib,scripts,data,...}, and the
+        # INSTALL_SCHEME dictionary above.  Phew!
+
+        self.dump_dirs("pre-finalize_{unix,other}")
+
+        if os.name == 'posix':
+            self.finalize_unix()
+        else:
+            self.finalize_other()
+
+        self.dump_dirs("post-finalize_{unix,other}()")
+
+        # Expand configuration variables, tilde, etc. in self.install_base
+        # and self.install_platbase -- that way, we can use $base or
+        # $platbase in the other installation directories and not worry
+        # about needing recursive variable expansion (shudder).
+
+        py_version = sys.version.split()[0]
+        (prefix, exec_prefix) = get_config_vars('prefix', 'exec_prefix')
+        try:
+            abiflags = sys.abiflags
+        except AttributeError:
+            # sys.abiflags may not be defined on all platforms.
+            abiflags = ''
+        self.config_vars = {'dist_name': self.distribution.get_name(),
+                            'dist_version': self.distribution.get_version(),
+                            'dist_fullname': self.distribution.get_fullname(),
+                            'py_version': py_version,
+                            'py_version_short': '%d.%d' % sys.version_info[:2],
+                            'py_version_nodot': '%d%d' % sys.version_info[:2],
+                            'sys_prefix': prefix,
+                            'prefix': prefix,
+                            'sys_exec_prefix': exec_prefix,
+                            'exec_prefix': exec_prefix,
+                            'abiflags': abiflags,
+                            'platlibdir': getattr(sys, 'platlibdir', 'lib'),
+                           }
+
+        if HAS_USER_SITE:
+            self.config_vars['userbase'] = self.install_userbase
+            self.config_vars['usersite'] = self.install_usersite
+
+        self.expand_basedirs()
+
+        self.dump_dirs("post-expand_basedirs()")
+
+        # Now define config vars for the base directories so we can expand
+        # everything else.
+        self.config_vars['base'] = self.install_base
+        self.config_vars['platbase'] = self.install_platbase
+
+        if DEBUG:
+            from pprint import pprint
+            print("config vars:")
+            pprint(self.config_vars)
+
+        # Expand "~" and configuration variables in the installation
+        # directories.
+        self.expand_dirs()
+
+        self.dump_dirs("post-expand_dirs()")
+
+        # Create directories in the home dir:
+        if self.user:
+            self.create_home_path()
+
+        # Pick the actual directory to install all modules to: either
+        # install_purelib or install_platlib, depending on whether this
+        # module distribution is pure or not.  Of course, if the user
+        # already specified install_lib, use their selection.
+        if self.install_lib is None:
+            if self.distribution.has_ext_modules(): # has extensions: non-pure
+                self.install_lib = self.install_platlib
+            else:
+                self.install_lib = self.install_purelib
+
+
+        # Convert directories from Unix /-separated syntax to the local
+        # convention.
+        self.convert_paths('lib', 'purelib', 'platlib',
+                           'scripts', 'data', 'headers',
+                           'userbase', 'usersite')
+
+        # Deprecated
+        # Well, we're not actually fully completely finalized yet: we still
+        # have to deal with 'extra_path', which is the hack for allowing
+        # non-packagized module distributions (hello, Numerical Python!) to
+        # get their own directories.
+        self.handle_extra_path()
+        self.install_libbase = self.install_lib # needed for .pth file
+        self.install_lib = os.path.join(self.install_lib, self.extra_dirs)
+
+        # If a new root directory was supplied, make all the installation
+        # dirs relative to it.
+        if self.root is not None:
+            self.change_roots('libbase', 'lib', 'purelib', 'platlib',
+                              'scripts', 'data', 'headers')
+
+        self.dump_dirs("after prepending root")
+
+        # Find out the build directories, ie. where to install from.
+        self.set_undefined_options('build',
+                                   ('build_base', 'build_base'),
+                                   ('build_lib', 'build_lib'))
+
+        # Punt on doc directories for now -- after all, we're punting on
+        # documentation completely!
+
+    def dump_dirs(self, msg):
+        """Dumps the list of user options."""
+        if not DEBUG:
+            return
+        from distutils.fancy_getopt import longopt_xlate
+        log.debug(msg + ":")
+        for opt in self.user_options:
+            opt_name = opt[0]
+            if opt_name[-1] == "=":
+                opt_name = opt_name[0:-1]
+            if opt_name in self.negative_opt:
+                opt_name = self.negative_opt[opt_name]
+                opt_name = opt_name.translate(longopt_xlate)
+                val = not getattr(self, opt_name)
+            else:
+                opt_name = opt_name.translate(longopt_xlate)
+                val = getattr(self, opt_name)
+            log.debug("  %s: %s", opt_name, val)
+
+    def finalize_unix(self):
+        """Finalizes options for posix platforms."""
+        if self.install_base is not None or self.install_platbase is not None:
+            if ((self.install_lib is None and
+                 self.install_purelib is None and
+                 self.install_platlib is None) or
+                self.install_headers is None or
+                self.install_scripts is None or
+                self.install_data is None):
+                raise DistutilsOptionError(
+                      "install-base or install-platbase supplied, but "
+                      "installation scheme is incomplete")
+            return
+
+        if self.user:
+            if self.install_userbase is None:
+                raise DistutilsPlatformError(
+                    "User base directory is not specified")
+            self.install_base = self.install_platbase = self.install_userbase
+            self.select_scheme("unix_user")
+        elif self.home is not None:
+            self.install_base = self.install_platbase = self.home
+            self.select_scheme("unix_home")
+        else:
+            if self.prefix is None:
+                if self.exec_prefix is not None:
+                    raise DistutilsOptionError(
+                          "must not supply exec-prefix without prefix")
+
+                self.prefix = os.path.normpath(sys.prefix)
+                self.exec_prefix = os.path.normpath(sys.exec_prefix)
+
+            else:
+                if self.exec_prefix is None:
+                    self.exec_prefix = self.prefix
+
+            self.install_base = self.prefix
+            self.install_platbase = self.exec_prefix
+            self.select_scheme("unix_prefix")
+
+    def finalize_other(self):
+        """Finalizes options for non-posix platforms"""
+        if self.user:
+            if self.install_userbase is None:
+                raise DistutilsPlatformError(
+                    "User base directory is not specified")
+            self.install_base = self.install_platbase = self.install_userbase
+            self.select_scheme(os.name + "_user")
+        elif self.home is not None:
+            self.install_base = self.install_platbase = self.home
+            self.select_scheme("unix_home")
+        else:
+            if self.prefix is None:
+                self.prefix = os.path.normpath(sys.prefix)
+
+            self.install_base = self.install_platbase = self.prefix
+            try:
+                self.select_scheme(os.name)
+            except KeyError:
+                raise DistutilsPlatformError(
+                      "I don't know how to install stuff on '%s'" % os.name)
+
+    def select_scheme(self, name):
+        """Sets the install directories by applying the install schemes."""
+        # it's the caller's problem if they supply a bad name!
+        if (hasattr(sys, 'pypy_version_info') and
+                not name.endswith(('_user', '_home'))):
+            if os.name == 'nt':
+                name = 'pypy_nt'
+            else:
+                name = 'pypy'
+        scheme = INSTALL_SCHEMES[name]
+        for key in SCHEME_KEYS:
+            attrname = 'install_' + key
+            if getattr(self, attrname) is None:
+                setattr(self, attrname, scheme[key])
+
+    def _expand_attrs(self, attrs):
+        for attr in attrs:
+            val = getattr(self, attr)
+            if val is not None:
+                if os.name == 'posix' or os.name == 'nt':
+                    val = os.path.expanduser(val)
+                val = subst_vars(val, self.config_vars)
+                setattr(self, attr, val)
+
+    def expand_basedirs(self):
+        """Calls `os.path.expanduser` on install_base, install_platbase and
+        root."""
+        self._expand_attrs(['install_base', 'install_platbase', 'root'])
+
+    def expand_dirs(self):
+        """Calls `os.path.expanduser` on install dirs."""
+        self._expand_attrs(['install_purelib', 'install_platlib',
+                            'install_lib', 'install_headers',
+                            'install_scripts', 'install_data',])
+
+    def convert_paths(self, *names):
+        """Call `convert_path` over `names`."""
+        for name in names:
+            attr = "install_" + name
+            setattr(self, attr, convert_path(getattr(self, attr)))
+
+    def handle_extra_path(self):
+        """Set `path_file` and `extra_dirs` using `extra_path`."""
+        if self.extra_path is None:
+            self.extra_path = self.distribution.extra_path
+
+        if self.extra_path is not None:
+            log.warn(
+                "Distribution option extra_path is deprecated. "
+                "See issue27919 for details."
+            )
+            if isinstance(self.extra_path, str):
+                self.extra_path = self.extra_path.split(',')
+
+            if len(self.extra_path) == 1:
+                path_file = extra_dirs = self.extra_path[0]
+            elif len(self.extra_path) == 2:
+                path_file, extra_dirs = self.extra_path
+            else:
+                raise DistutilsOptionError(
+                      "'extra_path' option must be a list, tuple, or "
+                      "comma-separated string with 1 or 2 elements")
+
+            # convert to local form in case Unix notation used (as it
+            # should be in setup scripts)
+            extra_dirs = convert_path(extra_dirs)
+        else:
+            path_file = None
+            extra_dirs = ''
+
+        # XXX should we warn if path_file and not extra_dirs? (in which
+        # case the path file would be harmless but pointless)
+        self.path_file = path_file
+        self.extra_dirs = extra_dirs
+
+    def change_roots(self, *names):
+        """Change the install directories pointed by name using root."""
+        for name in names:
+            attr = "install_" + name
+            setattr(self, attr, change_root(self.root, getattr(self, attr)))
+
+    def create_home_path(self):
+        """Create directories under ~."""
+        if not self.user:
+            return
+        home = convert_path(os.path.expanduser("~"))
+        for name, path in self.config_vars.items():
+            if path.startswith(home) and not os.path.isdir(path):
+                self.debug_print("os.makedirs('%s', 0o700)" % path)
+                os.makedirs(path, 0o700)
+
+    # -- Command execution methods -------------------------------------
+
+    def run(self):
+        """Runs the command."""
+        # Obviously have to build before we can install
+        if not self.skip_build:
+            self.run_command('build')
+            # If we built for any other platform, we can't install.
+            build_plat = self.distribution.get_command_obj('build').plat_name
+            # check warn_dir - it is a clue that the 'install' is happening
+            # internally, and not to sys.path, so we don't check the platform
+            # matches what we are running.
+            if self.warn_dir and build_plat != get_platform():
+                raise DistutilsPlatformError("Can't install when "
+                                             "cross-compiling")
+
+        # Run all sub-commands (at least those that need to be run)
+        for cmd_name in self.get_sub_commands():
+            self.run_command(cmd_name)
+
+        if self.path_file:
+            self.create_path_file()
+
+        # write list of installed files, if requested.
+        if self.record:
+            outputs = self.get_outputs()
+            if self.root:               # strip any package prefix
+                root_len = len(self.root)
+                for counter in range(len(outputs)):
+                    outputs[counter] = outputs[counter][root_len:]
+            self.execute(write_file,
+                         (self.record, outputs),
+                         "writing list of installed files to '%s'" %
+                         self.record)
+
+        sys_path = map(os.path.normpath, sys.path)
+        sys_path = map(os.path.normcase, sys_path)
+        install_lib = os.path.normcase(os.path.normpath(self.install_lib))
+        if (self.warn_dir and
+            not (self.path_file and self.install_path_file) and
+            install_lib not in sys_path):
+            log.debug(("modules installed to '%s', which is not in "
+                       "Python's module search path (sys.path) -- "
+                       "you'll have to change the search path yourself"),
+                       self.install_lib)
+
+    def create_path_file(self):
+        """Creates the .pth file"""
+        filename = os.path.join(self.install_libbase,
+                                self.path_file + ".pth")
+        if self.install_path_file:
+            self.execute(write_file,
+                         (filename, [self.extra_dirs]),
+                         "creating %s" % filename)
+        else:
+            self.warn("path file '%s' not created" % filename)
+
+
+    # -- Reporting methods ---------------------------------------------
+
+    def get_outputs(self):
+        """Assembles the outputs of all the sub-commands."""
+        outputs = []
+        for cmd_name in self.get_sub_commands():
+            cmd = self.get_finalized_command(cmd_name)
+            # Add the contents of cmd.get_outputs(), ensuring
+            # that outputs doesn't contain duplicate entries
+            for filename in cmd.get_outputs():
+                if filename not in outputs:
+                    outputs.append(filename)
+
+        if self.path_file and self.install_path_file:
+            outputs.append(os.path.join(self.install_libbase,
+                                        self.path_file + ".pth"))
+
+        return outputs
+
+    def get_inputs(self):
+        """Returns the inputs of all the sub-commands"""
+        # XXX gee, this looks familiar ;-(
+        inputs = []
+        for cmd_name in self.get_sub_commands():
+            cmd = self.get_finalized_command(cmd_name)
+            inputs.extend(cmd.get_inputs())
+
+        return inputs
+
+    # -- Predicates for sub-command list -------------------------------
+
+    def has_lib(self):
+        """Returns true if the current distribution has any Python
+        modules to install."""
+        return (self.distribution.has_pure_modules() or
+                self.distribution.has_ext_modules())
+
+    def has_headers(self):
+        """Returns true if the current distribution has any headers to
+        install."""
+        return self.distribution.has_headers()
+
+    def has_scripts(self):
+        """Returns true if the current distribution has any scripts to.
+        install."""
+        return self.distribution.has_scripts()
+
+    def has_data(self):
+        """Returns true if the current distribution has any data to.
+        install."""
+        return self.distribution.has_data_files()
+
+    # 'sub_commands': a list of commands this command might have to run to
+    # get its work done.  See cmd.py for more info.
+    sub_commands = [('install_lib',     has_lib),
+                    ('install_headers', has_headers),
+                    ('install_scripts', has_scripts),
+                    ('install_data',    has_data),
+                    ('install_egg_info', lambda self:True),
+                   ]

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/install_data.py

@@ -0,0 +1,79 @@
+"""distutils.command.install_data
+
+Implements the Distutils 'install_data' command, for installing
+platform-independent data files."""
+
+# contributed by Bastian Kleineidam
+
+import os
+from distutils.core import Command
+from distutils.util import change_root, convert_path
+
+class install_data(Command):
+
+    description = "install data files"
+
+    user_options = [
+        ('install-dir=', 'd',
+         "base directory for installing data files "
+         "(default: installation base dir)"),
+        ('root=', None,
+         "install everything relative to this alternate root directory"),
+        ('force', 'f', "force installation (overwrite existing files)"),
+        ]
+
+    boolean_options = ['force']
+
+    def initialize_options(self):
+        self.install_dir = None
+        self.outfiles = []
+        self.root = None
+        self.force = 0
+        self.data_files = self.distribution.data_files
+        self.warn_dir = 1
+
+    def finalize_options(self):
+        self.set_undefined_options('install',
+                                   ('install_data', 'install_dir'),
+                                   ('root', 'root'),
+                                   ('force', 'force'),
+                                  )
+
+    def run(self):
+        self.mkpath(self.install_dir)
+        for f in self.data_files:
+            if isinstance(f, str):
+                # it's a simple file, so copy it
+                f = convert_path(f)
+                if self.warn_dir:
+                    self.warn("setup script did not provide a directory for "
+                              "'%s' -- installing right in '%s'" %
+                              (f, self.install_dir))
+                (out, _) = self.copy_file(f, self.install_dir)
+                self.outfiles.append(out)
+            else:
+                # it's a tuple with path to install to and a list of files
+                dir = convert_path(f[0])
+                if not os.path.isabs(dir):
+                    dir = os.path.join(self.install_dir, dir)
+                elif self.root:
+                    dir = change_root(self.root, dir)
+                self.mkpath(dir)
+
+                if f[1] == []:
+                    # If there are no files listed, the user must be
+                    # trying to create an empty directory, so add the
+                    # directory to the list of output files.
+                    self.outfiles.append(dir)
+                else:
+                    # Copy files, adding them to the list of output files.
+                    for data in f[1]:
+                        data = convert_path(data)
+                        (out, _) = self.copy_file(data, dir)
+                        self.outfiles.append(out)
+
+    def get_inputs(self):
+        return self.data_files or []
+
+    def get_outputs(self):
+        return self.outfiles

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/install_egg_info.py

@@ -0,0 +1,77 @@
+"""distutils.command.install_egg_info
+
+Implements the Distutils 'install_egg_info' command, for installing
+a package's PKG-INFO metadata."""
+
+
+from distutils.cmd import Command
+from distutils import log, dir_util
+import os, sys, re
+
+class install_egg_info(Command):
+    """Install an .egg-info file for the package"""
+
+    description = "Install package's PKG-INFO metadata as an .egg-info file"
+    user_options = [
+        ('install-dir=', 'd', "directory to install to"),
+    ]
+
+    def initialize_options(self):
+        self.install_dir = None
+
+    def finalize_options(self):
+        self.set_undefined_options('install_lib',('install_dir','install_dir'))
+        basename = "%s-%s-py%d.%d.egg-info" % (
+            to_filename(safe_name(self.distribution.get_name())),
+            to_filename(safe_version(self.distribution.get_version())),
+            *sys.version_info[:2]
+        )
+        self.target = os.path.join(self.install_dir, basename)
+        self.outputs = [self.target]
+
+    def run(self):
+        target = self.target
+        if os.path.isdir(target) and not os.path.islink(target):
+            dir_util.remove_tree(target, dry_run=self.dry_run)
+        elif os.path.exists(target):
+            self.execute(os.unlink,(self.target,),"Removing "+target)
+        elif not os.path.isdir(self.install_dir):
+            self.execute(os.makedirs, (self.install_dir,),
+                         "Creating "+self.install_dir)
+        log.info("Writing %s", target)
+        if not self.dry_run:
+            with open(target, 'w', encoding='UTF-8') as f:
+                self.distribution.metadata.write_pkg_file(f)
+
+    def get_outputs(self):
+        return self.outputs
+
+
+# The following routines are taken from setuptools' pkg_resources module and
+# can be replaced by importing them from pkg_resources once it is included
+# in the stdlib.
+
+def safe_name(name):
+    """Convert an arbitrary string to a standard distribution name
+
+    Any runs of non-alphanumeric/. characters are replaced with a single '-'.
+    """
+    return re.sub('[^A-Za-z0-9.]+', '-', name)
+
+
+def safe_version(version):
+    """Convert an arbitrary string to a standard version string
+
+    Spaces become dots, and all other non-alphanumeric characters become
+    dashes, with runs of multiple dashes condensed to a single dash.
+    """
+    version = version.replace(' ','.')
+    return re.sub('[^A-Za-z0-9.]+', '-', version)
+
+
+def to_filename(name):
+    """Convert a project or version name to its filename-escaped form
+
+    Any '-' characters are currently replaced with '_'.
+    """
+    return name.replace('-','_')

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/install_headers.py

@@ -0,0 +1,47 @@
+"""distutils.command.install_headers
+
+Implements the Distutils 'install_headers' command, to install C/C++ header
+files to the Python include directory."""
+
+from distutils.core import Command
+
+
+# XXX force is never used
+class install_headers(Command):
+
+    description = "install C/C++ header files"
+
+    user_options = [('install-dir=', 'd',
+                     "directory to install header files to"),
+                    ('force', 'f',
+                     "force installation (overwrite existing files)"),
+                   ]
+
+    boolean_options = ['force']
+
+    def initialize_options(self):
+        self.install_dir = None
+        self.force = 0
+        self.outfiles = []
+
+    def finalize_options(self):
+        self.set_undefined_options('install',
+                                   ('install_headers', 'install_dir'),
+                                   ('force', 'force'))
+
+
+    def run(self):
+        headers = self.distribution.headers
+        if not headers:
+            return
+
+        self.mkpath(self.install_dir)
+        for header in headers:
+            (out, _) = self.copy_file(header, self.install_dir)
+            self.outfiles.append(out)
+
+    def get_inputs(self):
+        return self.distribution.headers or []
+
+    def get_outputs(self):
+        return self.outfiles

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/install_lib.py

@@ -0,0 +1,217 @@
+"""distutils.command.install_lib
+
+Implements the Distutils 'install_lib' command
+(install all Python modules)."""
+
+import os
+import importlib.util
+import sys
+
+from distutils.core import Command
+from distutils.errors import DistutilsOptionError
+
+
+# Extension for Python source files.
+PYTHON_SOURCE_EXTENSION = ".py"
+
+class install_lib(Command):
+
+    description = "install all Python modules (extensions and pure Python)"
+
+    # The byte-compilation options are a tad confusing.  Here are the
+    # possible scenarios:
+    #   1) no compilation at all (--no-compile --no-optimize)
+    #   2) compile .pyc only (--compile --no-optimize; default)
+    #   3) compile .pyc and "opt-1" .pyc (--compile --optimize)
+    #   4) compile "opt-1" .pyc only (--no-compile --optimize)
+    #   5) compile .pyc and "opt-2" .pyc (--compile --optimize-more)
+    #   6) compile "opt-2" .pyc only (--no-compile --optimize-more)
+    #
+    # The UI for this is two options, 'compile' and 'optimize'.
+    # 'compile' is strictly boolean, and only decides whether to
+    # generate .pyc files.  'optimize' is three-way (0, 1, or 2), and
+    # decides both whether to generate .pyc files and what level of
+    # optimization to use.
+
+    user_options = [
+        ('install-dir=', 'd', "directory to install to"),
+        ('build-dir=','b', "build directory (where to install from)"),
+        ('force', 'f', "force installation (overwrite existing files)"),
+        ('compile', 'c', "compile .py to .pyc [default]"),
+        ('no-compile', None, "don't compile .py files"),
+        ('optimize=', 'O',
+         "also compile with optimization: -O1 for \"python -O\", "
+         "-O2 for \"python -OO\", and -O0 to disable [default: -O0]"),
+        ('skip-build', None, "skip the build steps"),
+        ]
+
+    boolean_options = ['force', 'compile', 'skip-build']
+    negative_opt = {'no-compile' : 'compile'}
+
+    def initialize_options(self):
+        # let the 'install' command dictate our installation directory
+        self.install_dir = None
+        self.build_dir = None
+        self.force = 0
+        self.compile = None
+        self.optimize = None
+        self.skip_build = None
+
+    def finalize_options(self):
+        # Get all the information we need to install pure Python modules
+        # from the umbrella 'install' command -- build (source) directory,
+        # install (target) directory, and whether to compile .py files.
+        self.set_undefined_options('install',
+                                   ('build_lib', 'build_dir'),
+                                   ('install_lib', 'install_dir'),
+                                   ('force', 'force'),
+                                   ('compile', 'compile'),
+                                   ('optimize', 'optimize'),
+                                   ('skip_build', 'skip_build'),
+                                  )
+
+        if self.compile is None:
+            self.compile = True
+        if self.optimize is None:
+            self.optimize = False
+
+        if not isinstance(self.optimize, int):
+            try:
+                self.optimize = int(self.optimize)
+                if self.optimize not in (0, 1, 2):
+                    raise AssertionError
+            except (ValueError, AssertionError):
+                raise DistutilsOptionError("optimize must be 0, 1, or 2")
+
+    def run(self):
+        # Make sure we have built everything we need first
+        self.build()
+
+        # Install everything: simply dump the entire contents of the build
+        # directory to the installation directory (that's the beauty of
+        # having a build directory!)
+        outfiles = self.install()
+
+        # (Optionally) compile .py to .pyc
+        if outfiles is not None and self.distribution.has_pure_modules():
+            self.byte_compile(outfiles)
+
+    # -- Top-level worker functions ------------------------------------
+    # (called from 'run()')
+
+    def build(self):
+        if not self.skip_build:
+            if self.distribution.has_pure_modules():
+                self.run_command('build_py')
+            if self.distribution.has_ext_modules():
+                self.run_command('build_ext')
+
+    def install(self):
+        if os.path.isdir(self.build_dir):
+            outfiles = self.copy_tree(self.build_dir, self.install_dir)
+        else:
+            self.warn("'%s' does not exist -- no Python modules to install" %
+                      self.build_dir)
+            return
+        return outfiles
+
+    def byte_compile(self, files):
+        if sys.dont_write_bytecode:
+            self.warn('byte-compiling is disabled, skipping.')
+            return
+
+        from distutils.util import byte_compile
+
+        # Get the "--root" directory supplied to the "install" command,
+        # and use it as a prefix to strip off the purported filename
+        # encoded in bytecode files.  This is far from complete, but it
+        # should at least generate usable bytecode in RPM distributions.
+        install_root = self.get_finalized_command('install').root
+
+        if self.compile:
+            byte_compile(files, optimize=0,
+                         force=self.force, prefix=install_root,
+                         dry_run=self.dry_run)
+        if self.optimize > 0:
+            byte_compile(files, optimize=self.optimize,
+                         force=self.force, prefix=install_root,
+                         verbose=self.verbose, dry_run=self.dry_run)
+
+
+    # -- Utility methods -----------------------------------------------
+
+    def _mutate_outputs(self, has_any, build_cmd, cmd_option, output_dir):
+        if not has_any:
+            return []
+
+        build_cmd = self.get_finalized_command(build_cmd)
+        build_files = build_cmd.get_outputs()
+        build_dir = getattr(build_cmd, cmd_option)
+
+        prefix_len = len(build_dir) + len(os.sep)
+        outputs = []
+        for file in build_files:
+            outputs.append(os.path.join(output_dir, file[prefix_len:]))
+
+        return outputs
+
+    def _bytecode_filenames(self, py_filenames):
+        bytecode_files = []
+        for py_file in py_filenames:
+            # Since build_py handles package data installation, the
+            # list of outputs can contain more than just .py files.
+            # Make sure we only report bytecode for the .py files.
+            ext = os.path.splitext(os.path.normcase(py_file))[1]
+            if ext != PYTHON_SOURCE_EXTENSION:
+                continue
+            if self.compile:
+                bytecode_files.append(importlib.util.cache_from_source(
+                    py_file, optimization=''))
+            if self.optimize > 0:
+                bytecode_files.append(importlib.util.cache_from_source(
+                    py_file, optimization=self.optimize))
+
+        return bytecode_files
+
+
+    # -- External interface --------------------------------------------
+    # (called by outsiders)
+
+    def get_outputs(self):
+        """Return the list of files that would be installed if this command
+        were actually run.  Not affected by the "dry-run" flag or whether
+        modules have actually been built yet.
+        """
+        pure_outputs = \
+            self._mutate_outputs(self.distribution.has_pure_modules(),
+                                 'build_py', 'build_lib',
+                                 self.install_dir)
+        if self.compile:
+            bytecode_outputs = self._bytecode_filenames(pure_outputs)
+        else:
+            bytecode_outputs = []
+
+        ext_outputs = \
+            self._mutate_outputs(self.distribution.has_ext_modules(),
+                                 'build_ext', 'build_lib',
+                                 self.install_dir)
+
+        return pure_outputs + bytecode_outputs + ext_outputs
+
+    def get_inputs(self):
+        """Get the list of files that are input to this command, ie. the
+        files that get installed as they are named in the build tree.
+        The files in this list correspond one-to-one to the output
+        filenames returned by 'get_outputs()'.
+        """
+        inputs = []
+
+        if self.distribution.has_pure_modules():
+            build_py = self.get_finalized_command('build_py')
+            inputs.extend(build_py.get_outputs())
+
+        if self.distribution.has_ext_modules():
+            build_ext = self.get_finalized_command('build_ext')
+            inputs.extend(build_ext.get_outputs())
+
+        return inputs

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/install_scripts.py

@@ -0,0 +1,60 @@
+"""distutils.command.install_scripts
+
+Implements the Distutils 'install_scripts' command, for installing
+Python scripts."""
+
+# contributed by Bastian Kleineidam
+
+import os
+from distutils.core import Command
+from distutils import log
+from stat import ST_MODE
+
+
+class install_scripts(Command):
+
+    description = "install scripts (Python or otherwise)"
+
+    user_options = [
+        ('install-dir=', 'd', "directory to install scripts to"),
+        ('build-dir=','b', "build directory (where to install from)"),
+        ('force', 'f', "force installation (overwrite existing files)"),
+        ('skip-build', None, "skip the build steps"),
+    ]
+
+    boolean_options = ['force', 'skip-build']
+
+    def initialize_options(self):
+        self.install_dir = None
+        self.force = 0
+        self.build_dir = None
+        self.skip_build = None
+
+    def finalize_options(self):
+        self.set_undefined_options('build', ('build_scripts', 'build_dir'))
+        self.set_undefined_options('install',
+                                   ('install_scripts', 'install_dir'),
+                                   ('force', 'force'),
+                                   ('skip_build', 'skip_build'),
+                                  )
+
+    def run(self):
+        if not self.skip_build:
+            self.run_command('build_scripts')
+        self.outfiles = self.copy_tree(self.build_dir, self.install_dir)
+        if os.name == 'posix':
+            # Set the executable bits (owner, group, and world) on
+            # all the scripts we just installed.
+            for file in self.get_outputs():
+                if self.dry_run:
+                    log.info("changing mode of %s", file)
+                else:
+                    mode = ((os.stat(file)[ST_MODE]) | 0o555) & 0o7777
+                    log.info("changing mode of %s to %o", file, mode)
+                    os.chmod(file, mode)
+
+    def get_inputs(self):
+        return self.distribution.scripts or []
+
+    def get_outputs(self):
+        return self.outfiles or []

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/py37compat.py

@@ -0,0 +1,30 @@
+import sys
+
+
+def _pythonlib_compat():
+    """
+    On Python 3.7 and earlier, distutils would include the Python
+    library. See pypa/distutils#9.
+    """
+    from distutils import sysconfig
+    if not sysconfig.get_config_var('Py_ENABLED_SHARED'):
+        return
+
+    yield 'python{}.{}{}'.format(
+        sys.hexversion >> 24,
+        (sys.hexversion >> 16) & 0xff,
+        sysconfig.get_config_var('ABIFLAGS'),
+    )
+
+
+def compose(f1, f2):
+    return lambda *args, **kwargs: f1(f2(*args, **kwargs))
+
+
+pythonlib = (
+    compose(list, _pythonlib_compat)
+    if sys.version_info < (3, 8)
+    and sys.platform != 'darwin'
+    and sys.platform[:3] != 'aix'
+    else list
+)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/register.py

@@ -0,0 +1,304 @@
+"""distutils.command.register
+
+Implements the Distutils 'register' command (register with the repository).
+"""
+
+# created 2002/10/21, Richard Jones
+
+import getpass
+import io
+import urllib.parse, urllib.request
+from warnings import warn
+
+from distutils.core import PyPIRCCommand
+from distutils.errors import *
+from distutils import log
+
+class register(PyPIRCCommand):
+
+    description = ("register the distribution with the Python package index")
+    user_options = PyPIRCCommand.user_options + [
+        ('list-classifiers', None,
+         'list the valid Trove classifiers'),
+        ('strict', None ,
+         'Will stop the registering if the meta-data are not fully compliant')
+        ]
+    boolean_options = PyPIRCCommand.boolean_options + [
+        'verify', 'list-classifiers', 'strict']
+
+    sub_commands = [('check', lambda self: True)]
+
+    def initialize_options(self):
+        PyPIRCCommand.initialize_options(self)
+        self.list_classifiers = 0
+        self.strict = 0
+
+    def finalize_options(self):
+        PyPIRCCommand.finalize_options(self)
+        # setting options for the `check` subcommand
+        check_options = {'strict': ('register', self.strict),
+                         'restructuredtext': ('register', 1)}
+        self.distribution.command_options['check'] = check_options
+
+    def run(self):
+        self.finalize_options()
+        self._set_config()
+
+        # Run sub commands
+        for cmd_name in self.get_sub_commands():
+            self.run_command(cmd_name)
+
+        if self.dry_run:
+            self.verify_metadata()
+        elif self.list_classifiers:
+            self.classifiers()
+        else:
+            self.send_metadata()
+
+    def check_metadata(self):
+        """Deprecated API."""
+        warn("distutils.command.register.check_metadata is deprecated, \
+              use the check command instead", PendingDeprecationWarning)
+        check = self.distribution.get_command_obj('check')
+        check.ensure_finalized()
+        check.strict = self.strict
+        check.restructuredtext = 1
+        check.run()
+
+    def _set_config(self):
+        ''' Reads the configuration file and set attributes.
+        '''
+        config = self._read_pypirc()
+        if config != {}:
+            self.username = config['username']
+            self.password = config['password']
+            self.repository = config['repository']
+            self.realm = config['realm']
+            self.has_config = True
+        else:
+            if self.repository not in ('pypi', self.DEFAULT_REPOSITORY):
+                raise ValueError('%s not found in .pypirc' % self.repository)
+            if self.repository == 'pypi':
+                self.repository = self.DEFAULT_REPOSITORY
+            self.has_config = False
+
+    def classifiers(self):
+        ''' Fetch the list of classifiers from the server.
+        '''
+        url = self.repository+'?:action=list_classifiers'
+        response = urllib.request.urlopen(url)
+        log.info(self._read_pypi_response(response))
+
+    def verify_metadata(self):
+        ''' Send the metadata to the package index server to be checked.
+        '''
+        # send the info to the server and report the result
+        (code, result) = self.post_to_server(self.build_post_data('verify'))
+        log.info('Server response (%s): %s', code, result)
+
+    def send_metadata(self):
+        ''' Send the metadata to the package index server.
+
+            Well, do the following:
+            1. figure who the user is, and then
+            2. send the data as a Basic auth'ed POST.
+
+            First we try to read the username/password from $HOME/.pypirc,
+            which is a ConfigParser-formatted file with a section
+            [distutils] containing username and password entries (both
+            in clear text). Eg:
+
+                [distutils]
+                index-servers =
+                    pypi
+
+                [pypi]
+                username: fred
+                password: sekrit
+
+            Otherwise, to figure who the user is, we offer the user three
+            choices:
+
+             1. use existing login,
+             2. register as a new user, or
+             3. set the password to a random string and email the user.
+
+        '''
+        # see if we can short-cut and get the username/password from the
+        # config
+        if self.has_config:
+            choice = '1'
+            username = self.username
+            password = self.password
+        else:
+            choice = 'x'
+            username = password = ''
+
+        # get the user's login info
+        choices = '1 2 3 4'.split()
+        while choice not in choices:
+            self.announce('''\
+We need to know who you are, so please choose either:
+ 1. use your existing login,
+ 2. register as a new user,
+ 3. have the server generate a new password for you (and email it to you), or
+ 4. quit
+Your selection [default 1]: ''', log.INFO)
+            choice = input()
+            if not choice:
+                choice = '1'
+            elif choice not in choices:
+                print('Please choose one of the four options!')
+
+        if choice == '1':
+            # get the username and password
+            while not username:
+                username = input('Username: ')
+            while not password:
+                password = getpass.getpass('Password: ')
+
+            # set up the authentication
+            auth = urllib.request.HTTPPasswordMgr()
+            host = urllib.parse.urlparse(self.repository)[1]
+            auth.add_password(self.realm, host, username, password)
+            # send the info to the server and report the result
+            code, result = self.post_to_server(self.build_post_data('submit'),
+                auth)
+            self.announce('Server response (%s): %s' % (code, result),
+                          log.INFO)
+
+            # possibly save the login
+            if code == 200:
+                if self.has_config:
+                    # sharing the password in the distribution instance
+                    # so the upload command can reuse it
+                    self.distribution.password = password
+                else:
+                    self.announce(('I can store your PyPI login so future '
+                                   'submissions will be faster.'), log.INFO)
+                    self.announce('(the login will be stored in %s)' % \
+                                  self._get_rc_file(), log.INFO)
+                    choice = 'X'
+                    while choice.lower() not in 'yn':
+                        choice = input('Save your login (y/N)?')
+                        if not choice:
+                            choice = 'n'
+                    if choice.lower() == 'y':
+                        self._store_pypirc(username, password)
+
+        elif choice == '2':
+            data = {':action': 'user'}
+            data['name'] = data['password'] = data['email'] = ''
+            data['confirm'] = None
+            while not data['name']:
+                data['name'] = input('Username: ')
+            while data['password'] != data['confirm']:
+                while not data['password']:
+                    data['password'] = getpass.getpass('Password: ')
+                while not data['confirm']:
+                    data['confirm'] = getpass.getpass(' Confirm: ')
+                if data['password'] != data['confirm']:
+                    data['password'] = ''
+                    data['confirm'] = None
+                    print("Password and confirm don't match!")
+            while not data['email']:
+                data['email'] = input('   EMail: ')
+            code, result = self.post_to_server(data)
+            if code != 200:
+                log.info('Server response (%s): %s', code, result)
+            else:
+                log.info('You will receive an email shortly.')
+                log.info(('Follow the instructions in it to '
+                          'complete registration.'))
+        elif choice == '3':
+            data = {':action': 'password_reset'}
+            data['email'] = ''
+            while not data['email']:
+                data['email'] = input('Your email address: ')
+            code, result = self.post_to_server(data)
+            log.info('Server response (%s): %s', code, result)
+
+    def build_post_data(self, action):
+        # figure the data to send - the metadata plus some additional
+        # information used by the package server
+        meta = self.distribution.metadata
+        data = {
+            ':action': action,
+            'metadata_version' : '1.0',
+            'name': meta.get_name(),
+            'version': meta.get_version(),
+            'summary': meta.get_description(),
+            'home_page': meta.get_url(),
+            'author': meta.get_contact(),
+            'author_email': meta.get_contact_email(),
+            'license': meta.get_licence(),
+            'description': meta.get_long_description(),
+            'keywords': meta.get_keywords(),
+            'platform': meta.get_platforms(),
+            'classifiers': meta.get_classifiers(),
+            'download_url': meta.get_download_url(),
+            # PEP 314
+            'provides': meta.get_provides(),
+            'requires': meta.get_requires(),
+            'obsoletes': meta.get_obsoletes(),
+        }
+        if data['provides'] or data['requires'] or data['obsoletes']:
+            data['metadata_version'] = '1.1'
+        return data
+
+    def post_to_server(self, data, auth=None):
+        ''' Post a query to the server, and return a string response.
+        '''
+        if 'name' in data:
+            self.announce('Registering %s to %s' % (data['name'],
+                                                    self.repository),
+                                                    log.INFO)
+        # Build up the MIME payload for the urllib2 POST data
+        boundary = '--------------GHSKFJDLGDS7543FJKLFHRE75642756743254'
+        sep_boundary = '\n--' + boundary
+        end_boundary = sep_boundary + '--'
+        body = io.StringIO()
+        for key, value in data.items():
+            # handle multiple entries for the same name
+            if type(value) not in (type([]), type( () )):
+                value = [value]
+            for value in value:
+                value = str(value)
+                body.write(sep_boundary)
+                body.write('\nContent-Disposition: form-data; name="%s"'%key)
+                body.write("\n\n")
+                body.write(value)
+                if value and value[-1] == '\r':
+                    body.write('\n')  # write an extra newline (lurve Macs)
+        body.write(end_boundary)
+        body.write("\n")
+        body = body.getvalue().encode("utf-8")
+
+        # build the Request
+        headers = {
+            'Content-type': 'multipart/form-data; boundary=%s; charset=utf-8'%boundary,
+            'Content-length': str(len(body))
+        }
+        req = urllib.request.Request(self.repository, body, headers)
+
+        # handle HTTP and include the Basic Auth handler
+        opener = urllib.request.build_opener(
+            urllib.request.HTTPBasicAuthHandler(password_mgr=auth)
+        )
+        data = ''
+        try:
+            result = opener.open(req)
+        except urllib.error.HTTPError as e:
+            if self.show_response:
+                data = e.fp.read()
+            result = e.code, e.msg
+        except urllib.error.URLError as e:
+            result = 500, str(e)
+        else:
+            if self.show_response:
+                data = self._read_pypi_response(result)
+            result = 200, 'OK'
+        if self.show_response:
+            msg = '\n'.join(('-' * 75, data, '-' * 75))
+            self.announce(msg, log.INFO)
+        return result

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/sdist.py

@@ -0,0 +1,494 @@
+"""distutils.command.sdist
+
+Implements the Distutils 'sdist' command (create a source distribution)."""
+
+import os
+import sys
+from glob import glob
+from warnings import warn
+
+from distutils.core import Command
+from distutils import dir_util
+from distutils import file_util
+from distutils import archive_util
+from distutils.text_file import TextFile
+from distutils.filelist import FileList
+from distutils import log
+from distutils.util import convert_path
+from distutils.errors import DistutilsTemplateError, DistutilsOptionError
+
+
+def show_formats():
+    """Print all possible values for the 'formats' option (used by
+    the "--help-formats" command-line option).
+    """
+    from distutils.fancy_getopt import FancyGetopt
+    from distutils.archive_util import ARCHIVE_FORMATS
+    formats = []
+    for format in ARCHIVE_FORMATS.keys():
+        formats.append(("formats=" + format, None,
+                        ARCHIVE_FORMATS[format][2]))
+    formats.sort()
+    FancyGetopt(formats).print_help(
+        "List of available source distribution formats:")
+
+
+class sdist(Command):
+
+    description = "create a source distribution (tarball, zip file, etc.)"
+
+    def checking_metadata(self):
+        """Callable used for the check sub-command.
+
+        Placed here so user_options can view it"""
+        return self.metadata_check
+
+    user_options = [
+        ('template=', 't',
+         "name of manifest template file [default: MANIFEST.in]"),
+        ('manifest=', 'm',
+         "name of manifest file [default: MANIFEST]"),
+        ('use-defaults', None,
+         "include the default file set in the manifest "
+         "[default; disable with --no-defaults]"),
+        ('no-defaults', None,
+         "don't include the default file set"),
+        ('prune', None,
+         "specifically exclude files/directories that should not be "
+         "distributed (build tree, RCS/CVS dirs, etc.) "
+         "[default; disable with --no-prune]"),
+        ('no-prune', None,
+         "don't automatically exclude anything"),
+        ('manifest-only', 'o',
+         "just regenerate the manifest and then stop "
+         "(implies --force-manifest)"),
+        ('force-manifest', 'f',
+         "forcibly regenerate the manifest and carry on as usual. "
+         "Deprecated: now the manifest is always regenerated."),
+        ('formats=', None,
+         "formats for source distribution (comma-separated list)"),
+        ('keep-temp', 'k',
+         "keep the distribution tree around after creating " +
+         "archive file(s)"),
+        ('dist-dir=', 'd',
+         "directory to put the source distribution archive(s) in "
+         "[default: dist]"),
+        ('metadata-check', None,
+         "Ensure that all required elements of meta-data "
+         "are supplied. Warn if any missing. [default]"),
+        ('owner=', 'u',
+         "Owner name used when creating a tar file [default: current user]"),
+        ('group=', 'g',
+         "Group name used when creating a tar file [default: current group]"),
+        ]
+
+    boolean_options = ['use-defaults', 'prune',
+                       'manifest-only', 'force-manifest',
+                       'keep-temp', 'metadata-check']
+
+    help_options = [
+        ('help-formats', None,
+         "list available distribution formats", show_formats),
+        ]
+
+    negative_opt = {'no-defaults': 'use-defaults',
+                    'no-prune': 'prune' }
+
+    sub_commands = [('check', checking_metadata)]
+
+    READMES = ('README', 'README.txt', 'README.rst')
+
+    def initialize_options(self):
+        # 'template' and 'manifest' are, respectively, the names of
+        # the manifest template and manifest file.
+        self.template = None
+        self.manifest = None
+
+        # 'use_defaults': if true, we will include the default file set
+        # in the manifest
+        self.use_defaults = 1
+        self.prune = 1
+
+        self.manifest_only = 0
+        self.force_manifest = 0
+
+        self.formats = ['gztar']
+        self.keep_temp = 0
+        self.dist_dir = None
+
+        self.archive_files = None
+        self.metadata_check = 1
+        self.owner = None
+        self.group = None
+
+    def finalize_options(self):
+        if self.manifest is None:
+            self.manifest = "MANIFEST"
+        if self.template is None:
+            self.template = "MANIFEST.in"
+
+        self.ensure_string_list('formats')
+
+        bad_format = archive_util.check_archive_formats(self.formats)
+        if bad_format:
+            raise DistutilsOptionError(
+                  "unknown archive format '%s'" % bad_format)
+
+        if self.dist_dir is None:
+            self.dist_dir = "dist"
+
+    def run(self):
+        # 'filelist' contains the list of files that will make up the
+        # manifest
+        self.filelist = FileList()
+
+        # Run sub commands
+        for cmd_name in self.get_sub_commands():
+            self.run_command(cmd_name)
+
+        # Do whatever it takes to get the list of files to process
+        # (process the manifest template, read an existing manifest,
+        # whatever).  File list is accumulated in 'self.filelist'.
+        self.get_file_list()
+
+        # If user just wanted us to regenerate the manifest, stop now.
+        if self.manifest_only:
+            return
+
+        # Otherwise, go ahead and create the source distribution tarball,
+        # or zipfile, or whatever.
+        self.make_distribution()
+
+    def check_metadata(self):
+        """Deprecated API."""
+        warn("distutils.command.sdist.check_metadata is deprecated, \
+              use the check command instead", PendingDeprecationWarning)
+        check = self.distribution.get_command_obj('check')
+        check.ensure_finalized()
+        check.run()
+
+    def get_file_list(self):
+        """Figure out the list of files to include in the source
+        distribution, and put it in 'self.filelist'.  This might involve
+        reading the manifest template (and writing the manifest), or just
+        reading the manifest, or just using the default file set -- it all
+        depends on the user's options.
+        """
+        # new behavior when using a template:
+        # the file list is recalculated every time because
+        # even if MANIFEST.in or setup.py are not changed
+        # the user might have added some files in the tree that
+        # need to be included.
+        #
+        #  This makes --force the default and only behavior with templates.
+        template_exists = os.path.isfile(self.template)
+        if not template_exists and self._manifest_is_not_generated():
+            self.read_manifest()
+            self.filelist.sort()
+            self.filelist.remove_duplicates()
+            return
+
+        if not template_exists:
+            self.warn(("manifest template '%s' does not exist " +
+                        "(using default file list)") %
+                        self.template)
+        self.filelist.findall()
+
+        if self.use_defaults:
+            self.add_defaults()
+
+        if template_exists:
+            self.read_template()
+
+        if self.prune:
+            self.prune_file_list()
+
+        self.filelist.sort()
+        self.filelist.remove_duplicates()
+        self.write_manifest()
+
+    def add_defaults(self):
+        """Add all the default files to self.filelist:
+          - README or README.txt
+          - setup.py
+          - test/test*.py
+          - all pure Python modules mentioned in setup script
+          - all files pointed by package_data (build_py)
+          - all files defined in data_files.
+          - all files defined as scripts.
+          - all C sources listed as part of extensions or C libraries
+            in the setup script (doesn't catch C headers!)
+        Warns if (README or README.txt) or setup.py are missing; everything
+        else is optional.
+        """
+        self._add_defaults_standards()
+        self._add_defaults_optional()
+        self._add_defaults_python()
+        self._add_defaults_data_files()
+        self._add_defaults_ext()
+        self._add_defaults_c_libs()
+        self._add_defaults_scripts()
+
+    @staticmethod
+    def _cs_path_exists(fspath):
+        """
+        Case-sensitive path existence check
+
+        >>> sdist._cs_path_exists(__file__)
+        True
+        >>> sdist._cs_path_exists(__file__.upper())
+        False
+        """
+        if not os.path.exists(fspath):
+            return False
+        # make absolute so we always have a directory
+        abspath = os.path.abspath(fspath)
+        directory, filename = os.path.split(abspath)
+        return filename in os.listdir(directory)
+
+    def _add_defaults_standards(self):
+        standards = [self.READMES, self.distribution.script_name]
+        for fn in standards:
+            if isinstance(fn, tuple):
+                alts = fn
+                got_it = False
+                for fn in alts:
+                    if self._cs_path_exists(fn):
+                        got_it = True
+                        self.filelist.append(fn)
+                        break
+
+                if not got_it:
+                    self.warn("standard file not found: should have one of " +
+                              ', '.join(alts))
+            else:
+                if self._cs_path_exists(fn):
+                    self.filelist.append(fn)
+                else:
+                    self.warn("standard file '%s' not found" % fn)
+
+    def _add_defaults_optional(self):
+        optional = ['test/test*.py', 'setup.cfg']
+        for pattern in optional:
+            files = filter(os.path.isfile, glob(pattern))
+            self.filelist.extend(files)
+
+    def _add_defaults_python(self):
+        # build_py is used to get:
+        #  - python modules
+        #  - files defined in package_data
+        build_py = self.get_finalized_command('build_py')
+
+        # getting python files
+        if self.distribution.has_pure_modules():
+            self.filelist.extend(build_py.get_source_files())
+
+        # getting package_data files
+        # (computed in build_py.data_files by build_py.finalize_options)
+        for pkg, src_dir, build_dir, filenames in build_py.data_files:
+            for filename in filenames:
+                self.filelist.append(os.path.join(src_dir, filename))
+
+    def _add_defaults_data_files(self):
+        # getting distribution.data_files
+        if self.distribution.has_data_files():
+            for item in self.distribution.data_files:
+                if isinstance(item, str):
+                    # plain file
+                    item = convert_path(item)
+                    if os.path.isfile(item):
+                        self.filelist.append(item)
+                else:
+                    # a (dirname, filenames) tuple
+                    dirname, filenames = item
+                    for f in filenames:
+                        f = convert_path(f)
+                        if os.path.isfile(f):
+                            self.filelist.append(f)
+
+    def _add_defaults_ext(self):
+        if self.distribution.has_ext_modules():
+            build_ext = self.get_finalized_command('build_ext')
+            self.filelist.extend(build_ext.get_source_files())
+
+    def _add_defaults_c_libs(self):
+        if self.distribution.has_c_libraries():
+            build_clib = self.get_finalized_command('build_clib')
+            self.filelist.extend(build_clib.get_source_files())
+
+    def _add_defaults_scripts(self):
+        if self.distribution.has_scripts():
+            build_scripts = self.get_finalized_command('build_scripts')
+            self.filelist.extend(build_scripts.get_source_files())
+
+    def read_template(self):
+        """Read and parse manifest template file named by self.template.
+
+        (usually "MANIFEST.in") The parsing and processing is done by
+        'self.filelist', which updates itself accordingly.
+        """
+        log.info("reading manifest template '%s'", self.template)
+        template = TextFile(self.template, strip_comments=1, skip_blanks=1,
+                            join_lines=1, lstrip_ws=1, rstrip_ws=1,
+                            collapse_join=1)
+
+        try:
+            while True:
+                line = template.readline()
+                if line is None:            # end of file
+                    break
+
+                try:
+                    self.filelist.process_template_line(line)
+                # the call above can raise a DistutilsTemplateError for
+                # malformed lines, or a ValueError from the lower-level
+                # convert_path function
+                except (DistutilsTemplateError, ValueError) as msg:
+                    self.warn("%s, line %d: %s" % (template.filename,
+                                                   template.current_line,
+                                                   msg))
+        finally:
+            template.close()
+
+    def prune_file_list(self):
+        """Prune off branches that might slip into the file list as created
+        by 'read_template()', but really don't belong there:
+          * the build tree (typically "build")
+          * the release tree itself (only an issue if we ran "sdist"
+            previously with --keep-temp, or it aborted)
+          * any RCS, CVS, .svn, .hg, .git, .bzr, _darcs directories
+        """
+        build = self.get_finalized_command('build')
+        base_dir = self.distribution.get_fullname()
+
+        self.filelist.exclude_pattern(None, prefix=build.build_base)
+        self.filelist.exclude_pattern(None, prefix=base_dir)
+
+        if sys.platform == 'win32':
+            seps = r'/|\\'
+        else:
+            seps = '/'
+
+        vcs_dirs = ['RCS', 'CVS', r'\.svn', r'\.hg', r'\.git', r'\.bzr',
+                    '_darcs']
+        vcs_ptrn = r'(^|%s)(%s)(%s).*' % (seps, '|'.join(vcs_dirs), seps)
+        self.filelist.exclude_pattern(vcs_ptrn, is_regex=1)
+
+    def write_manifest(self):
+        """Write the file list in 'self.filelist' (presumably as filled in
+        by 'add_defaults()' and 'read_template()') to the manifest file
+        named by 'self.manifest'.
+        """
+        if self._manifest_is_not_generated():
+            log.info("not writing to manually maintained "
+                     "manifest file '%s'" % self.manifest)
+            return
+
+        content = self.filelist.files[:]
+        content.insert(0, '# file GENERATED by distutils, do NOT edit')
+        self.execute(file_util.write_file, (self.manifest, content),
+                     "writing manifest file '%s'" % self.manifest)
+
+    def _manifest_is_not_generated(self):
+        # check for special comment used in 3.1.3 and higher
+        if not os.path.isfile(self.manifest):
+            return False
+
+        fp = open(self.manifest)
+        try:
+            first_line = fp.readline()
+        finally:
+            fp.close()
+        return first_line != '# file GENERATED by distutils, do NOT edit\n'
+
+    def read_manifest(self):
+        """Read the manifest file (named by 'self.manifest') and use it to
+        fill in 'self.filelist', the list of files to include in the source
+        distribution.
+        """
+        log.info("reading manifest file '%s'", self.manifest)
+        with open(self.manifest) as manifest:
+            for line in manifest:
+                # ignore comments and blank lines
+                line = line.strip()
+                if line.startswith('#') or not line:
+                    continue
+                self.filelist.append(line)
+
+    def make_release_tree(self, base_dir, files):
+        """Create the directory tree that will become the source
+        distribution archive.  All directories implied by the filenames in
+        'files' are created under 'base_dir', and then we hard link or copy
+        (if hard linking is unavailable) those files into place.
+        Essentially, this duplicates the developer's source tree, but in a
+        directory named after the distribution, containing only the files
+        to be distributed.
+        """
+        # Create all the directories under 'base_dir' necessary to
+        # put 'files' there; the 'mkpath()' is just so we don't die
+        # if the manifest happens to be empty.
+        self.mkpath(base_dir)
+        dir_util.create_tree(base_dir, files, dry_run=self.dry_run)
+
+        # And walk over the list of files, either making a hard link (if
+        # os.link exists) to each one that doesn't already exist in its
+        # corresponding location under 'base_dir', or copying each file
+        # that's out-of-date in 'base_dir'.  (Usually, all files will be
+        # out-of-date, because by default we blow away 'base_dir' when
+        # we're done making the distribution archives.)
+
+        if hasattr(os, 'link'):        # can make hard links on this system
+            link = 'hard'
+            msg = "making hard links in %s..." % base_dir
+        else:                           # nope, have to copy
+            link = None
+            msg = "copying files to %s..." % base_dir
+
+        if not files:
+            log.warn("no files to distribute -- empty manifest?")
+        else:
+            log.info(msg)
+        for file in files:
+            if not os.path.isfile(file):
+                log.warn("'%s' not a regular file -- skipping", file)
+            else:
+                dest = os.path.join(base_dir, file)
+                self.copy_file(file, dest, link=link)
+
+        self.distribution.metadata.write_pkg_info(base_dir)
+
+    def make_distribution(self):
+        """Create the source distribution(s).  First, we create the release
+        tree with 'make_release_tree()'; then, we create all required
+        archive files (according to 'self.formats') from the release tree.
+        Finally, we clean up by blowing away the release tree (unless
+        'self.keep_temp' is true).  The list of archive files created is
+        stored so it can be retrieved later by 'get_archive_files()'.
+        """
+        # Don't warn about missing meta-data here -- should be (and is!)
+        # done elsewhere.
+        base_dir = self.distribution.get_fullname()
+        base_name = os.path.join(self.dist_dir, base_dir)
+
+        self.make_release_tree(base_dir, self.filelist.files)
+        archive_files = []              # remember names of files we create
+        # tar archive must be created last to avoid overwrite and remove
+        if 'tar' in self.formats:
+            self.formats.append(self.formats.pop(self.formats.index('tar')))
+
+        for fmt in self.formats:
+            file = self.make_archive(base_name, fmt, base_dir=base_dir,
+                                     owner=self.owner, group=self.group)
+            archive_files.append(file)
+            self.distribution.dist_files.append(('sdist', '', file))
+
+        self.archive_files = archive_files
+
+        if not self.keep_temp:
+            dir_util.remove_tree(base_dir, dry_run=self.dry_run)
+
+    def get_archive_files(self):
+        """Return the list of archive files created when the command
+        was run, or None if the command hasn't run yet.
+        """
+        return self.archive_files

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/command/upload.py

@@ -0,0 +1,214 @@
+"""
+distutils.command.upload
+
+Implements the Distutils 'upload' subcommand (upload package to a package
+index).
+"""
+
+import os
+import io
+import hashlib
+from base64 import standard_b64encode
+from urllib.request import urlopen, Request, HTTPError
+from urllib.parse import urlparse
+from distutils.errors import DistutilsError, DistutilsOptionError
+from distutils.core import PyPIRCCommand
+from distutils.spawn import spawn
+from distutils import log
+
+
+# PyPI Warehouse supports MD5, SHA256, and Blake2 (blake2-256)
+# https://bugs.python.org/issue40698
+_FILE_CONTENT_DIGESTS = {
+    "md5_digest": getattr(hashlib, "md5", None),
+    "sha256_digest": getattr(hashlib, "sha256", None),
+    "blake2_256_digest": getattr(hashlib, "blake2b", None),
+}
+
+
+class upload(PyPIRCCommand):
+
+    description = "upload binary package to PyPI"
+
+    user_options = PyPIRCCommand.user_options + [
+        ('sign', 's',
+         'sign files to upload using gpg'),
+        ('identity=', 'i', 'GPG identity used to sign files'),
+        ]
+
+    boolean_options = PyPIRCCommand.boolean_options + ['sign']
+
+    def initialize_options(self):
+        PyPIRCCommand.initialize_options(self)
+        self.username = ''
+        self.password = ''
+        self.show_response = 0
+        self.sign = False
+        self.identity = None
+
+    def finalize_options(self):
+        PyPIRCCommand.finalize_options(self)
+        if self.identity and not self.sign:
+            raise DistutilsOptionError(
+                "Must use --sign for --identity to have meaning"
+            )
+        config = self._read_pypirc()
+        if config != {}:
+            self.username = config['username']
+            self.password = config['password']
+            self.repository = config['repository']
+            self.realm = config['realm']
+
+        # getting the password from the distribution
+        # if previously set by the register command
+        if not self.password and self.distribution.password:
+            self.password = self.distribution.password
+
+    def run(self):
+        if not self.distribution.dist_files:
+            msg = ("Must create and upload files in one command "
+                   "(e.g. setup.py sdist upload)")
+            raise DistutilsOptionError(msg)
+        for command, pyversion, filename in self.distribution.dist_files:
+            self.upload_file(command, pyversion, filename)
+
+    def upload_file(self, command, pyversion, filename):
+        # Makes sure the repository URL is compliant
+        schema, netloc, url, params, query, fragments = \
+            urlparse(self.repository)
+        if params or query or fragments:
+            raise AssertionError("Incompatible url %s" % self.repository)
+
+        if schema not in ('http', 'https'):
+            raise AssertionError("unsupported schema " + schema)
+
+        # Sign if requested
+        if self.sign:
+            gpg_args = ["gpg", "--detach-sign", "-a", filename]
+            if self.identity:
+                gpg_args[2:2] = ["--local-user", self.identity]
+            spawn(gpg_args,
+                  dry_run=self.dry_run)
+
+        # Fill in the data - send all the meta-data in case we need to
+        # register a new release
+        f = open(filename,'rb')
+        try:
+            content = f.read()
+        finally:
+            f.close()
+
+        meta = self.distribution.metadata
+        data = {
+            # action
+            ':action': 'file_upload',
+            'protocol_version': '1',
+
+            # identify release
+            'name': meta.get_name(),
+            'version': meta.get_version(),
+
+            # file content
+            'content': (os.path.basename(filename),content),
+            'filetype': command,
+            'pyversion': pyversion,
+
+            # additional meta-data
+            'metadata_version': '1.0',
+            'summary': meta.get_description(),
+            'home_page': meta.get_url(),
+            'author': meta.get_contact(),
+            'author_email': meta.get_contact_email(),
+            'license': meta.get_licence(),
+            'description': meta.get_long_description(),
+            'keywords': meta.get_keywords(),
+            'platform': meta.get_platforms(),
+            'classifiers': meta.get_classifiers(),
+            'download_url': meta.get_download_url(),
+            # PEP 314
+            'provides': meta.get_provides(),
+            'requires': meta.get_requires(),
+            'obsoletes': meta.get_obsoletes(),
+            }
+
+        data['comment'] = ''
+
+        # file content digests
+        for digest_name, digest_cons in _FILE_CONTENT_DIGESTS.items():
+            if digest_cons is None:
+                continue
+            try:
+                data[digest_name] = digest_cons(content).hexdigest()
+            except ValueError:
+                # hash digest not available or blocked by security policy
+                pass
+
+        if self.sign:
+            with open(filename + ".asc", "rb") as f:
+                data['gpg_signature'] = (os.path.basename(filename) + ".asc",
+                                         f.read())
+
+        # set up the authentication
+        user_pass = (self.username + ":" + self.password).encode('ascii')
+        # The exact encoding of the authentication string is debated.
+        # Anyway PyPI only accepts ascii for both username or password.
+        auth = "Basic " + standard_b64encode(user_pass).decode('ascii')
+
+        # Build up the MIME payload for the POST data
+        boundary = '--------------GHSKFJDLGDS7543FJKLFHRE75642756743254'
+        sep_boundary = b'\r\n--' + boundary.encode('ascii')
+        end_boundary = sep_boundary + b'--\r\n'
+        body = io.BytesIO()
+        for key, value in data.items():
+            title = '\r\nContent-Disposition: form-data; name="%s"' % key
+            # handle multiple entries for the same name
+            if not isinstance(value, list):
+                value = [value]
+            for value in value:
+                if type(value) is tuple:
+                    title += '; filename="%s"' % value[0]
+                    value = value[1]
+                else:
+                    value = str(value).encode('utf-8')
+                body.write(sep_boundary)
+                body.write(title.encode('utf-8'))
+                body.write(b"\r\n\r\n")
+                body.write(value)
+        body.write(end_boundary)
+        body = body.getvalue()
+
+        msg = "Submitting %s to %s" % (filename, self.repository)
+        self.announce(msg, log.INFO)
+
+        # build the Request
+        headers = {
+            'Content-type': 'multipart/form-data; boundary=%s' % boundary,
+            'Content-length': str(len(body)),
+            'Authorization': auth,
+        }
+
+        request = Request(self.repository, data=body,
+                          headers=headers)
+        # send the data
+        try:
+            result = urlopen(request)
+            status = result.getcode()
+            reason = result.msg
+        except HTTPError as e:
+            status = e.code
+            reason = e.msg
+        except OSError as e:
+            self.announce(str(e), log.ERROR)
+            raise
+
+        if status == 200:
+            self.announce('Server response (%s): %s' % (status, reason),
+                          log.INFO)
+            if self.show_response:
+                text = self._read_pypi_response(result)
+                msg = '\n'.join(('-' * 75, text, '-' * 75))
+                self.announce(msg, log.INFO)
+        else:
+            msg = 'Upload failed (%s): %s' % (status, reason)
+            self.announce(msg, log.ERROR)
+            raise DistutilsError(msg)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/config.py

@@ -0,0 +1,130 @@
+"""distutils.pypirc
+
+Provides the PyPIRCCommand class, the base class for the command classes
+that uses .pypirc in the distutils.command package.
+"""
+import os
+from configparser import RawConfigParser
+
+from distutils.cmd import Command
+
+DEFAULT_PYPIRC = """\
+[distutils]
+index-servers =
+    pypi
+
+[pypi]
+username:%s
+password:%s
+"""
+
+class PyPIRCCommand(Command):
+    """Base command that knows how to handle the .pypirc file
+    """
+    DEFAULT_REPOSITORY = 'https://upload.pypi.org/legacy/'
+    DEFAULT_REALM = 'pypi'
+    repository = None
+    realm = None
+
+    user_options = [
+        ('repository=', 'r',
+         "url of repository [default: %s]" % \
+            DEFAULT_REPOSITORY),
+        ('show-response', None,
+         'display full response text from server')]
+
+    boolean_options = ['show-response']
+
+    def _get_rc_file(self):
+        """Returns rc file path."""
+        return os.path.join(os.path.expanduser('~'), '.pypirc')
+
+    def _store_pypirc(self, username, password):
+        """Creates a default .pypirc file."""
+        rc = self._get_rc_file()
+        with os.fdopen(os.open(rc, os.O_CREAT | os.O_WRONLY, 0o600), 'w') as f:
+            f.write(DEFAULT_PYPIRC % (username, password))
+
+    def _read_pypirc(self):
+        """Reads the .pypirc file."""
+        rc = self._get_rc_file()
+        if os.path.exists(rc):
+            self.announce('Using PyPI login from %s' % rc)
+            repository = self.repository or self.DEFAULT_REPOSITORY
+
+            config = RawConfigParser()
+            config.read(rc)
+            sections = config.sections()
+            if 'distutils' in sections:
+                # let's get the list of servers
+                index_servers = config.get('distutils', 'index-servers')
+                _servers = [server.strip() for server in
+                            index_servers.split('\n')
+                            if server.strip() != '']
+                if _servers == []:
+                    # nothing set, let's try to get the default pypi
+                    if 'pypi' in sections:
+                        _servers = ['pypi']
+                    else:
+                        # the file is not properly defined, returning
+                        # an empty dict
+                        return {}
+                for server in _servers:
+                    current = {'server': server}
+                    current['username'] = config.get(server, 'username')
+
+                    # optional params
+                    for key, default in (('repository',
+                                          self.DEFAULT_REPOSITORY),
+                                         ('realm', self.DEFAULT_REALM),
+                                         ('password', None)):
+                        if config.has_option(server, key):
+                            current[key] = config.get(server, key)
+                        else:
+                            current[key] = default
+
+                    # work around people having "repository" for the "pypi"
+                    # section of their config set to the HTTP (rather than
+                    # HTTPS) URL
+                    if (server == 'pypi' and
+                        repository in (self.DEFAULT_REPOSITORY, 'pypi')):
+                        current['repository'] = self.DEFAULT_REPOSITORY
+                        return current
+
+                    if (current['server'] == repository or
+                        current['repository'] == repository):
+                        return current
+            elif 'server-login' in sections:
+                # old format
+                server = 'server-login'
+                if config.has_option(server, 'repository'):
+                    repository = config.get(server, 'repository')
+                else:
+                    repository = self.DEFAULT_REPOSITORY
+                return {'username': config.get(server, 'username'),
+                        'password': config.get(server, 'password'),
+                        'repository': repository,
+                        'server': server,
+                        'realm': self.DEFAULT_REALM}
+
+        return {}
+
+    def _read_pypi_response(self, response):
+        """Read and decode a PyPI HTTP response."""
+        import cgi
+        content_type = response.getheader('content-type', 'text/plain')
+        encoding = cgi.parse_header(content_type)[1].get('charset', 'ascii')
+        return response.read().decode(encoding)
+
+    def initialize_options(self):
+        """Initialize options."""
+        self.repository = None
+        self.realm = None
+        self.show_response = 0
+
+    def finalize_options(self):
+        """Finalizes options."""
+        if self.repository is None:
+            self.repository = self.DEFAULT_REPOSITORY
+        if self.realm is None:
+            self.realm = self.DEFAULT_REALM

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/core.py

@@ -0,0 +1,234 @@
+"""distutils.core
+
+The only module that needs to be imported to use the Distutils; provides
+the 'setup' function (which is to be called from the setup script).  Also
+indirectly provides the Distribution and Command classes, although they are
+really defined in distutils.dist and distutils.cmd.
+"""
+
+import os
+import sys
+
+from distutils.debug import DEBUG
+from distutils.errors import *
+
+# Mainly import these so setup scripts can "from distutils.core import" them.
+from distutils.dist import Distribution
+from distutils.cmd import Command
+from distutils.config import PyPIRCCommand
+from distutils.extension import Extension
+
+# This is a barebones help message generated displayed when the user
+# runs the setup script with no arguments at all.  More useful help
+# is generated with various --help options: global help, list commands,
+# and per-command help.
+USAGE = """\
+usage: %(script)s [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
+   or: %(script)s --help [cmd1 cmd2 ...]
+   or: %(script)s --help-commands
+   or: %(script)s cmd --help
+"""
+
+def gen_usage (script_name):
+    script = os.path.basename(script_name)
+    return USAGE % vars()
+
+
+# Some mild magic to control the behaviour of 'setup()' from 'run_setup()'.
+_setup_stop_after = None
+_setup_distribution = None
+
+# Legal keyword arguments for the setup() function
+setup_keywords = ('distclass', 'script_name', 'script_args', 'options',
+                  'name', 'version', 'author', 'author_email',
+                  'maintainer', 'maintainer_email', 'url', 'license',
+                  'description', 'long_description', 'keywords',
+                  'platforms', 'classifiers', 'download_url',
+                  'requires', 'provides', 'obsoletes',
+                  )
+
+# Legal keyword arguments for the Extension constructor
+extension_keywords = ('name', 'sources', 'include_dirs',
+                      'define_macros', 'undef_macros',
+                      'library_dirs', 'libraries', 'runtime_library_dirs',
+                      'extra_objects', 'extra_compile_args', 'extra_link_args',
+                      'swig_opts', 'export_symbols', 'depends', 'language')
+
+def setup (**attrs):
+    """The gateway to the Distutils: do everything your setup script needs
+    to do, in a highly flexible and user-driven way.  Briefly: create a
+    Distribution instance; find and parse config files; parse the command
+    line; run each Distutils command found there, customized by the options
+    supplied to 'setup()' (as keyword arguments), in config files, and on
+    the command line.
+
+    The Distribution instance might be an instance of a class supplied via
+    the 'distclass' keyword argument to 'setup'; if no such class is
+    supplied, then the Distribution class (in dist.py) is instantiated.
+    All other arguments to 'setup' (except for 'cmdclass') are used to set
+    attributes of the Distribution instance.
+
+    The 'cmdclass' argument, if supplied, is a dictionary mapping command
+    names to command classes.  Each command encountered on the command line
+    will be turned into a command class, which is in turn instantiated; any
+    class found in 'cmdclass' is used in place of the default, which is
+    (for command 'foo_bar') class 'foo_bar' in module
+    'distutils.command.foo_bar'.  The command class must provide a
+    'user_options' attribute which is a list of option specifiers for
+    'distutils.fancy_getopt'.  Any command-line options between the current
+    and the next command are used to set attributes of the current command
+    object.
+
+    When the entire command-line has been successfully parsed, calls the
+    'run()' method on each command object in turn.  This method will be
+    driven entirely by the Distribution object (which each command object
+    has a reference to, thanks to its constructor), and the
+    command-specific options that became attributes of each command
+    object.
+    """
+
+    global _setup_stop_after, _setup_distribution
+
+    # Determine the distribution class -- either caller-supplied or
+    # our Distribution (see below).
+    klass = attrs.get('distclass')
+    if klass:
+        del attrs['distclass']
+    else:
+        klass = Distribution
+
+    if 'script_name' not in attrs:
+        attrs['script_name'] = os.path.basename(sys.argv[0])
+    if 'script_args'  not in attrs:
+        attrs['script_args'] = sys.argv[1:]
+
+    # Create the Distribution instance, using the remaining arguments
+    # (ie. everything except distclass) to initialize it
+    try:
+        _setup_distribution = dist = klass(attrs)
+    except DistutilsSetupError as msg:
+        if 'name' not in attrs:
+            raise SystemExit("error in setup command: %s" % msg)
+        else:
+            raise SystemExit("error in %s setup command: %s" % \
+                  (attrs['name'], msg))
+
+    if _setup_stop_after == "init":
+        return dist
+
+    # Find and parse the config file(s): they will override options from
+    # the setup script, but be overridden by the command line.
+    dist.parse_config_files()
+
+    if DEBUG:
+        print("options (after parsing config files):")
+        dist.dump_option_dicts()
+
+    if _setup_stop_after == "config":
+        return dist
+
+    # Parse the command line and override config files; any
+    # command-line errors are the end user's fault, so turn them into
+    # SystemExit to suppress tracebacks.
+    try:
+        ok = dist.parse_command_line()
+    except DistutilsArgError as msg:
+        raise SystemExit(gen_usage(dist.script_name) + "\nerror: %s" % msg)
+
+    if DEBUG:
+        print("options (after parsing command line):")
+        dist.dump_option_dicts()
+
+    if _setup_stop_after == "commandline":
+        return dist
+
+    # And finally, run all the commands found on the command line.
+    if ok:
+        try:
+            dist.run_commands()
+        except KeyboardInterrupt:
+            raise SystemExit("interrupted")
+        except OSError as exc:
+            if DEBUG:
+                sys.stderr.write("error: %s\n" % (exc,))
+                raise
+            else:
+                raise SystemExit("error: %s" % (exc,))
+
+        except (DistutilsError,
+                CCompilerError) as msg:
+            if DEBUG:
+                raise
+            else:
+                raise SystemExit("error: " + str(msg))
+
+    return dist
+
+# setup ()
+
+
+def run_setup (script_name, script_args=None, stop_after="run"):
+    """Run a setup script in a somewhat controlled environment, and
+    return the Distribution instance that drives things.  This is useful
+    if you need to find out the distribution meta-data (passed as
+    keyword args from 'script' to 'setup()', or the contents of the
+    config files or command-line.
+
+    'script_name' is a file that will be read and run with 'exec()';
+    'sys.argv[0]' will be replaced with 'script' for the duration of the
+    call.  'script_args' is a list of strings; if supplied,
+    'sys.argv[1:]' will be replaced by 'script_args' for the duration of
+    the call.
+
+    'stop_after' tells 'setup()' when to stop processing; possible
+    values:
+      init
+        stop after the Distribution instance has been created and
+        populated with the keyword arguments to 'setup()'
+      config
+        stop after config files have been parsed (and their data
+        stored in the Distribution instance)
+      commandline
+        stop after the command-line ('sys.argv[1:]' or 'script_args')
+        have been parsed (and the data stored in the Distribution)
+      run [default]
+        stop after all commands have been run (the same as if 'setup()'
+        had been called in the usual way
+
+    Returns the Distribution instance, which provides all information
+    used to drive the Distutils.
+    """
+    if stop_after not in ('init', 'config', 'commandline', 'run'):
+        raise ValueError("invalid value for 'stop_after': %r" % (stop_after,))
+
+    global _setup_stop_after, _setup_distribution
+    _setup_stop_after = stop_after
+
+    save_argv = sys.argv.copy()
+    g = {'__file__': script_name}
+    try:
+        try:
+            sys.argv[0] = script_name
+            if script_args is not None:
+                sys.argv[1:] = script_args
+            with open(script_name, 'rb') as f:
+                exec(f.read(), g)
+        finally:
+            sys.argv = save_argv
+            _setup_stop_after = None
+    except SystemExit:
+        # Hmm, should we do something if exiting with a non-zero code
+        # (ie. error)?
+        pass
+
+    if _setup_distribution is None:
+        raise RuntimeError(("'distutils.core.setup()' was never called -- "
+               "perhaps '%s' is not a Distutils setup script?") % \
+              script_name)
+
+    # I wonder if the setup script's namespace -- g and l -- would be of
+    # any interest to callers?
+    #print "_setup_distribution:", _setup_distribution
+    return _setup_distribution
+
+# run_setup ()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/cygwinccompiler.py

@@ -0,0 +1,414 @@
+"""distutils.cygwinccompiler
+
+Provides the CygwinCCompiler class, a subclass of UnixCCompiler that
+handles the Cygwin port of the GNU C compiler to Windows.  It also contains
+the Mingw32CCompiler class which handles the mingw32 port of GCC (same as
+cygwin in no-cygwin mode).
+"""
+
+# problems:
+#
+# * if you use a msvc compiled python version (1.5.2)
+#   1. you have to insert a __GNUC__ section in its config.h
+#   2. you have to generate an import library for its dll
+#      - create a def-file for python??.dll
+#      - create an import library using
+#             dlltool --dllname python15.dll --def python15.def \
+#                       --output-lib libpython15.a
+#
+#   see also http://starship.python.net/crew/kernr/mingw32/Notes.html
+#
+# * We put export_symbols in a def-file, and don't use
+#   --export-all-symbols because it doesn't worked reliable in some
+#   tested configurations. And because other windows compilers also
+#   need their symbols specified this no serious problem.
+#
+# tested configurations:
+#
+# * cygwin gcc 2.91.57/ld 2.9.4/dllwrap 0.2.4 works
+#   (after patching python's config.h and for C++ some other include files)
+#   see also http://starship.python.net/crew/kernr/mingw32/Notes.html
+# * mingw32 gcc 2.95.2/ld 2.9.4/dllwrap 0.2.4 works
+#   (ld doesn't support -shared, so we use dllwrap)
+# * cygwin gcc 2.95.2/ld 2.10.90/dllwrap 2.10.90 works now
+#   - its dllwrap doesn't work, there is a bug in binutils 2.10.90
+#     see also http://sources.redhat.com/ml/cygwin/2000-06/msg01274.html
+#   - using gcc -mdll instead dllwrap doesn't work without -static because
+#     it tries to link against dlls instead their import libraries. (If
+#     it finds the dll first.)
+#     By specifying -static we force ld to link against the import libraries,
+#     this is windows standard and there are normally not the necessary symbols
+#     in the dlls.
+#   *** only the version of June 2000 shows these problems
+# * cygwin gcc 3.2/ld 2.13.90 works
+#   (ld supports -shared)
+# * mingw gcc 3.2/ld 2.13 works
+#   (ld supports -shared)
+# * llvm-mingw with Clang 11 works
+#   (lld supports -shared)
+
+import os
+import sys
+import copy
+from subprocess import Popen, PIPE, check_output
+import re
+
+from distutils.unixccompiler import UnixCCompiler
+from distutils.file_util import write_file
+from distutils.errors import (DistutilsExecError, CCompilerError,
+        CompileError, UnknownFileError)
+from distutils.version import LooseVersion
+from distutils.spawn import find_executable
+
+def get_msvcr():
+    """Include the appropriate MSVC runtime library if Python was built
+    with MSVC 7.0 or later.
+    """
+    msc_pos = sys.version.find('MSC v.')
+    if msc_pos != -1:
+        msc_ver = sys.version[msc_pos+6:msc_pos+10]
+        if msc_ver == '1300':
+            # MSVC 7.0
+            return ['msvcr70']
+        elif msc_ver == '1310':
+            # MSVC 7.1
+            return ['msvcr71']
+        elif msc_ver == '1400':
+            # VS2005 / MSVC 8.0
+            return ['msvcr80']
+        elif msc_ver == '1500':
+            # VS2008 / MSVC 9.0
+            return ['msvcr90']
+        elif msc_ver == '1600':
+            # VS2010 / MSVC 10.0
+            return ['msvcr100']
+        else:
+            raise ValueError("Unknown MS Compiler version %s " % msc_ver)
+
+
+class CygwinCCompiler(UnixCCompiler):
+    """ Handles the Cygwin port of the GNU C compiler to Windows.
+    """
+    compiler_type = 'cygwin'
+    obj_extension = ".o"
+    static_lib_extension = ".a"
+    shared_lib_extension = ".dll"
+    static_lib_format = "lib%s%s"
+    shared_lib_format = "%s%s"
+    exe_extension = ".exe"
+
+    def __init__(self, verbose=0, dry_run=0, force=0):
+
+        UnixCCompiler.__init__(self, verbose, dry_run, force)
+
+        status, details = check_config_h()
+        self.debug_print("Python's GCC status: %s (details: %s)" %
+                         (status, details))
+        if status is not CONFIG_H_OK:
+            self.warn(
+                "Python's pyconfig.h doesn't seem to support your compiler. "
+                "Reason: %s. "
+                "Compiling may fail because of undefined preprocessor macros."
+                % details)
+
+        self.cc = os.environ.get('CC', 'gcc')
+        self.cxx = os.environ.get('CXX', 'g++')
+
+        if ('gcc' in self.cc): # Start gcc workaround
+            self.gcc_version, self.ld_version, self.dllwrap_version = \
+                get_versions()
+            self.debug_print(self.compiler_type + ": gcc %s, ld %s, dllwrap %s\n" %
+                             (self.gcc_version,
+                              self.ld_version,
+                              self.dllwrap_version) )
+
+            # ld_version >= "2.10.90" and < "2.13" should also be able to use
+            # gcc -mdll instead of dllwrap
+            # Older dllwraps had own version numbers, newer ones use the
+            # same as the rest of binutils ( also ld )
+            # dllwrap 2.10.90 is buggy
+            if self.ld_version >= "2.10.90":
+                self.linker_dll = self.cc
+            else:
+                self.linker_dll = "dllwrap"
+
+            # ld_version >= "2.13" support -shared so use it instead of
+            # -mdll -static
+            if self.ld_version >= "2.13":
+                shared_option = "-shared"
+            else:
+                shared_option = "-mdll -static"
+        else: # Assume linker is up to date
+            self.linker_dll = self.cc
+            shared_option = "-shared"
+
+        self.set_executables(compiler='%s -mcygwin -O -Wall' % self.cc,
+                             compiler_so='%s -mcygwin -mdll -O -Wall' % self.cc,
+                             compiler_cxx='%s -mcygwin -O -Wall' % self.cxx,
+                             linker_exe='%s -mcygwin' % self.cc,
+                             linker_so=('%s -mcygwin %s' %
+                                        (self.linker_dll, shared_option)))
+
+        # cygwin and mingw32 need different sets of libraries
+        if ('gcc' in self.cc and self.gcc_version == "2.91.57"):
+            # cygwin shouldn't need msvcrt, but without the dlls will crash
+            # (gcc version 2.91.57) -- perhaps something about initialization
+            self.dll_libraries=["msvcrt"]
+            self.warn(
+                "Consider upgrading to a newer version of gcc")
+        else:
+            # Include the appropriate MSVC runtime library if Python was built
+            # with MSVC 7.0 or later.
+            self.dll_libraries = get_msvcr()
+
+    def _compile(self, obj, src, ext, cc_args, extra_postargs, pp_opts):
+        """Compiles the source by spawning GCC and windres if needed."""
+        if ext == '.rc' or ext == '.res':
+            # gcc needs '.res' and '.rc' compiled to object files !!!
+            try:
+                self.spawn(["windres", "-i", src, "-o", obj])
+            except DistutilsExecError as msg:
+                raise CompileError(msg)
+        else: # for other files use the C-compiler
+            try:
+                self.spawn(self.compiler_so + cc_args + [src, '-o', obj] +
+                           extra_postargs)
+            except DistutilsExecError as msg:
+                raise CompileError(msg)
+
+    def link(self, target_desc, objects, output_filename, output_dir=None,
+             libraries=None, library_dirs=None, runtime_library_dirs=None,
+             export_symbols=None, debug=0, extra_preargs=None,
+             extra_postargs=None, build_temp=None, target_lang=None):
+        """Link the objects."""
+        # use separate copies, so we can modify the lists
+        extra_preargs = copy.copy(extra_preargs or [])
+        libraries = copy.copy(libraries or [])
+        objects = copy.copy(objects or [])
+
+        # Additional libraries
+        libraries.extend(self.dll_libraries)
+
+        # handle export symbols by creating a def-file
+        # with executables this only works with gcc/ld as linker
+        if ((export_symbols is not None) and
+            (target_desc != self.EXECUTABLE or self.linker_dll == "gcc")):
+            # (The linker doesn't do anything if output is up-to-date.
+            # So it would probably better to check if we really need this,
+            # but for this we had to insert some unchanged parts of
+            # UnixCCompiler, and this is not what we want.)
+
+            # we want to put some files in the same directory as the
+            # object files are, build_temp doesn't help much
+            # where are the object files
+            temp_dir = os.path.dirname(objects[0])
+            # name of dll to give the helper files the same base name
+            (dll_name, dll_extension) = os.path.splitext(
+                os.path.basename(output_filename))
+
+            # generate the filenames for these files
+            def_file = os.path.join(temp_dir, dll_name + ".def")
+            lib_file = os.path.join(temp_dir, 'lib' + dll_name + ".a")
+
+            # Generate .def file
+            contents = [
+                "LIBRARY %s" % os.path.basename(output_filename),
+                "EXPORTS"]
+            for sym in export_symbols:
+                contents.append(sym)
+            self.execute(write_file, (def_file, contents),
+                         "writing %s" % def_file)
+
+            # next add options for def-file and to creating import libraries
+
+            # dllwrap uses different options than gcc/ld
+            if self.linker_dll == "dllwrap":
+                extra_preargs.extend(["--output-lib", lib_file])
+                # for dllwrap we have to use a special option
+                extra_preargs.extend(["--def", def_file])
+            # we use gcc/ld here and can be sure ld is >= 2.9.10
+            else:
+                # doesn't work: bfd_close build\...\libfoo.a: Invalid operation
+                #extra_preargs.extend(["-Wl,--out-implib,%s" % lib_file])
+                # for gcc/ld the def-file is specified as any object files
+                objects.append(def_file)
+
+        #end: if ((export_symbols is not None) and
+        #        (target_desc != self.EXECUTABLE or self.linker_dll == "gcc")):
+
+        # who wants symbols and a many times larger output file
+        # should explicitly switch the debug mode on
+        # otherwise we let dllwrap/ld strip the output file
+        # (On my machine: 10KiB < stripped_file < ??100KiB
+        #   unstripped_file = stripped_file + XXX KiB
+        #  ( XXX=254 for a typical python extension))
+        if not debug:
+            extra_preargs.append("-s")
+
+        UnixCCompiler.link(self, target_desc, objects, output_filename,
+                           output_dir, libraries, library_dirs,
+                           runtime_library_dirs,
+                           None, # export_symbols, we do this in our def-file
+                           debug, extra_preargs, extra_postargs, build_temp,
+                           target_lang)
+
+    # -- Miscellaneous methods -----------------------------------------
+
+    def object_filenames(self, source_filenames, strip_dir=0, output_dir=''):
+        """Adds supports for rc and res files."""
+        if output_dir is None:
+            output_dir = ''
+        obj_names = []
+        for src_name in source_filenames:
+            # use normcase to make sure '.rc' is really '.rc' and not '.RC'
+            base, ext = os.path.splitext(os.path.normcase(src_name))
+            if ext not in (self.src_extensions + ['.rc','.res']):
+                raise UnknownFileError("unknown file type '%s' (from '%s')" % \
+                      (ext, src_name))
+            if strip_dir:
+                base = os.path.basename (base)
+            if ext in ('.res', '.rc'):
+                # these need to be compiled to object files
+                obj_names.append (os.path.join(output_dir,
+                                              base + ext + self.obj_extension))
+            else:
+                obj_names.append (os.path.join(output_dir,
+                                               base + self.obj_extension))
+        return obj_names
+
+# the same as cygwin plus some additional parameters
+class Mingw32CCompiler(CygwinCCompiler):
+    """ Handles the Mingw32 port of the GNU C compiler to Windows.
+    """
+    compiler_type = 'mingw32'
+
+    def __init__(self, verbose=0, dry_run=0, force=0):
+
+        CygwinCCompiler.__init__ (self, verbose, dry_run, force)
+
+        # ld_version >= "2.13" support -shared so use it instead of
+        # -mdll -static
+        if ('gcc' in self.cc and self.ld_version < "2.13"):
+            shared_option = "-mdll -static"
+        else:
+            shared_option = "-shared"
+
+        # A real mingw32 doesn't need to specify a different entry point,
+        # but cygwin 2.91.57 in no-cygwin-mode needs it.
+        if ('gcc' in self.cc and self.gcc_version <= "2.91.57"):
+            entry_point = '--entry _DllMain@12'
+        else:
+            entry_point = ''
+
+        if is_cygwincc(self.cc):
+            raise CCompilerError(
+                'Cygwin gcc cannot be used with --compiler=mingw32')
+
+        self.set_executables(compiler='%s -O -Wall' % self.cc,
+                             compiler_so='%s -mdll -O -Wall' % self.cc,
+                             compiler_cxx='%s -O -Wall' % self.cxx,
+                             linker_exe='%s' % self.cc,
+                             linker_so='%s %s %s'
+                                        % (self.linker_dll, shared_option,
+                                           entry_point))
+        # Maybe we should also append -mthreads, but then the finished
+        # dlls need another dll (mingwm10.dll see Mingw32 docs)
+        # (-mthreads: Support thread-safe exception handling on `Mingw32')
+
+        # no additional libraries needed
+        self.dll_libraries=[]
+
+        # Include the appropriate MSVC runtime library if Python was built
+        # with MSVC 7.0 or later.
+        self.dll_libraries = get_msvcr()
+
+# Because these compilers aren't configured in Python's pyconfig.h file by
+# default, we should at least warn the user if he is using an unmodified
+# version.
+
+CONFIG_H_OK = "ok"
+CONFIG_H_NOTOK = "not ok"
+CONFIG_H_UNCERTAIN = "uncertain"
+
+def check_config_h():
+    """Check if the current Python installation appears amenable to building
+    extensions with GCC.
+
+    Returns a tuple (status, details), where 'status' is one of the following
+    constants:
+
+    - CONFIG_H_OK: all is well, go ahead and compile
+    - CONFIG_H_NOTOK: doesn't look good
+    - CONFIG_H_UNCERTAIN: not sure -- unable to read pyconfig.h
+
+    'details' is a human-readable string explaining the situation.
+
+    Note there are two ways to conclude "OK": either 'sys.version' contains
+    the string "GCC" (implying that this Python was built with GCC), or the
+    installed "pyconfig.h" contains the string "__GNUC__".
+    """
+
+    # XXX since this function also checks sys.version, it's not strictly a
+    # "pyconfig.h" check -- should probably be renamed...
+
+    from distutils import sysconfig
+
+    # if sys.version contains GCC then python was compiled with GCC, and the
+    # pyconfig.h file should be OK
+    if "GCC" in sys.version:
+        return CONFIG_H_OK, "sys.version mentions 'GCC'"
+
+    # Clang would also work
+    if "Clang" in sys.version:
+        return CONFIG_H_OK, "sys.version mentions 'Clang'"
+
+    # let's see if __GNUC__ is mentioned in python.h
+    fn = sysconfig.get_config_h_filename()
+    try:
+        config_h = open(fn)
+        try:
+            if "__GNUC__" in config_h.read():
+                return CONFIG_H_OK, "'%s' mentions '__GNUC__'" % fn
+            else:
+                return CONFIG_H_NOTOK, "'%s' does not mention '__GNUC__'" % fn
+        finally:
+            config_h.close()
+    except OSError as exc:
+        return (CONFIG_H_UNCERTAIN,
+                "couldn't read '%s': %s" % (fn, exc.strerror))
+
+RE_VERSION = re.compile(br'(\d+\.\d+(\.\d+)*)')
+
+def _find_exe_version(cmd):
+    """Find the version of an executable by running `cmd` in the shell.
+
+    If the command is not found, or the output does not match
+    `RE_VERSION`, returns None.
+    """
+    executable = cmd.split()[0]
+    if find_executable(executable) is None:
+        return None
+    out = Popen(cmd, shell=True, stdout=PIPE).stdout
+    try:
+        out_string = out.read()
+    finally:
+        out.close()
+    result = RE_VERSION.search(out_string)
+    if result is None:
+        return None
+    # LooseVersion works with strings
+    # so we need to decode our bytes
+    return LooseVersion(result.group(1).decode())
+
+def get_versions():
+    """ Try to find out the versions of gcc, ld and dllwrap.
+
+    If not possible it returns None for it.
+    """
+    commands = ['gcc -dumpversion', 'ld -v', 'dllwrap --version']
+    return tuple([_find_exe_version(cmd) for cmd in commands])
+
+def is_cygwincc(cc):
+    '''Try to determine if the compiler that would be used is from cygwin.'''
+    out_string = check_output([cc, '-dumpmachine'])
+    return out_string.strip().endswith(b'cygwin')

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/debug.py

@@ -0,0 +1,5 @@
+import os
+
+# If DISTUTILS_DEBUG is anything other than the empty string, we run in
+# debug mode.
+DEBUG = os.environ.get('DISTUTILS_DEBUG')

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/dep_util.py

@@ -0,0 +1,92 @@
+"""distutils.dep_util
+
+Utility functions for simple, timestamp-based dependency of files
+and groups of files; also, function based entirely on such
+timestamp dependency analysis."""
+
+import os
+from distutils.errors import DistutilsFileError
+
+
+def newer (source, target):
+    """Return true if 'source' exists and is more recently modified than
+    'target', or if 'source' exists and 'target' doesn't.  Return false if
+    both exist and 'target' is the same age or younger than 'source'.
+    Raise DistutilsFileError if 'source' does not exist.
+    """
+    if not os.path.exists(source):
+        raise DistutilsFileError("file '%s' does not exist" %
+                                 os.path.abspath(source))
+    if not os.path.exists(target):
+        return 1
+
+    from stat import ST_MTIME
+    mtime1 = os.stat(source)[ST_MTIME]
+    mtime2 = os.stat(target)[ST_MTIME]
+
+    return mtime1 > mtime2
+
+# newer ()
+
+
+def newer_pairwise (sources, targets):
+    """Walk two filename lists in parallel, testing if each source is newer
+    than its corresponding target.  Return a pair of lists (sources,
+    targets) where source is newer than target, according to the semantics
+    of 'newer()'.
+    """
+    if len(sources) != len(targets):
+        raise ValueError("'sources' and 'targets' must be same length")
+
+    # build a pair of lists (sources, targets) where  source is newer
+    n_sources = []
+    n_targets = []
+    for i in range(len(sources)):
+        if newer(sources[i], targets[i]):
+            n_sources.append(sources[i])
+            n_targets.append(targets[i])
+
+    return (n_sources, n_targets)
+
+# newer_pairwise ()
+
+
+def newer_group (sources, target, missing='error'):
+    """Return true if 'target' is out-of-date with respect to any file
+    listed in 'sources'.  In other words, if 'target' exists and is newer
+    than every file in 'sources', return false; otherwise return true.
+    'missing' controls what we do when a source file is missing; the
+    default ("error") is to blow up with an OSError from inside 'stat()';
+    if it is "ignore", we silently drop any missing source files; if it is
+    "newer", any missing source files make us assume that 'target' is
+    out-of-date (this is handy in "dry-run" mode: it'll make you pretend to
+    carry out commands that wouldn't work because inputs are missing, but
+    that doesn't matter because you're not actually going to run the
+    commands).
+    """
+    # If the target doesn't even exist, then it's definitely out-of-date.
+    if not os.path.exists(target):
+        return 1
+
+    # Otherwise we have to find out the hard way: if *any* source file
+    # is more recent than 'target', then 'target' is out-of-date and
+    # we can immediately return true.  If we fall through to the end
+    # of the loop, then 'target' is up-to-date and we return false.
+    from stat import ST_MTIME
+    target_mtime = os.stat(target)[ST_MTIME]
+    for source in sources:
+        if not os.path.exists(source):
+            if missing == 'error':      # blow up when we stat() the file
+                pass
+            elif missing == 'ignore':   # missing source dropped from
+                continue                #  target's dependency list
+            elif missing == 'newer':    # missing source means target is
+                return 1                #  out-of-date
+
+        source_mtime = os.stat(source)[ST_MTIME]
+        if source_mtime > target_mtime:
+            return 1
+    else:
+        return 0
+
+# newer_group ()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/dir_util.py

@@ -0,0 +1,210 @@
+"""distutils.dir_util
+
+Utility functions for manipulating directories and directory trees."""
+
+import os
+import errno
+from distutils.errors import DistutilsFileError, DistutilsInternalError
+from distutils import log
+
+# cache for by mkpath() -- in addition to cheapening redundant calls,
+# eliminates redundant "creating /foo/bar/baz" messages in dry-run mode
+_path_created = {}
+
+# I don't use os.makedirs because a) it's new to Python 1.5.2, and
+# b) it blows up if the directory already exists (I want to silently
+# succeed in that case).
+def mkpath(name, mode=0o777, verbose=1, dry_run=0):
+    """Create a directory and any missing ancestor directories.
+
+    If the directory already exists (or if 'name' is the empty string, which
+    means the current directory, which of course exists), then do nothing.
+    Raise DistutilsFileError if unable to create some directory along the way
+    (eg. some sub-path exists, but is a file rather than a directory).
+    If 'verbose' is true, print a one-line summary of each mkdir to stdout.
+    Return the list of directories actually created.
+    """
+
+    global _path_created
+
+    # Detect a common bug -- name is None
+    if not isinstance(name, str):
+        raise DistutilsInternalError(
+              "mkpath: 'name' must be a string (got %r)" % (name,))
+
+    # XXX what's the better way to handle verbosity? print as we create
+    # each directory in the path (the current behaviour), or only announce
+    # the creation of the whole path? (quite easy to do the latter since
+    # we're not using a recursive algorithm)
+
+    name = os.path.normpath(name)
+    created_dirs = []
+    if os.path.isdir(name) or name == '':
+        return created_dirs
+    if _path_created.get(os.path.abspath(name)):
+        return created_dirs
+
+    (head, tail) = os.path.split(name)
+    tails = [tail]                      # stack of lone dirs to create
+
+    while head and tail and not os.path.isdir(head):
+        (head, tail) = os.path.split(head)
+        tails.insert(0, tail)          # push next higher dir onto stack
+
+    # now 'head' contains the deepest directory that already exists
+    # (that is, the child of 'head' in 'name' is the highest directory
+    # that does *not* exist)
+    for d in tails:
+        #print "head = %s, d = %s: " % (head, d),
+        head = os.path.join(head, d)
+        abs_head = os.path.abspath(head)
+
+        if _path_created.get(abs_head):
+            continue
+
+        if verbose >= 1:
+            log.info("creating %s", head)
+
+        if not dry_run:
+            try:
+                os.mkdir(head, mode)
+            except OSError as exc:
+                if not (exc.errno == errno.EEXIST and os.path.isdir(head)):
+                    raise DistutilsFileError(
+                          "could not create '%s': %s" % (head, exc.args[-1]))
+            created_dirs.append(head)
+
+        _path_created[abs_head] = 1
+    return created_dirs
+
+def create_tree(base_dir, files, mode=0o777, verbose=1, dry_run=0):
+    """Create all the empty directories under 'base_dir' needed to put 'files'
+    there.
+
+    'base_dir' is just the name of a directory which doesn't necessarily
+    exist yet; 'files' is a list of filenames to be interpreted relative to
+    'base_dir'.  'base_dir' + the directory portion of every file in 'files'
+    will be created if it doesn't already exist.  'mode', 'verbose' and
+    'dry_run' flags are as for 'mkpath()'.
+    """
+    # First get the list of directories to create
+    need_dir = set()
+    for file in files:
+        need_dir.add(os.path.join(base_dir, os.path.dirname(file)))
+
+    # Now create them
+    for dir in sorted(need_dir):
+        mkpath(dir, mode, verbose=verbose, dry_run=dry_run)
+
+def copy_tree(src, dst, preserve_mode=1, preserve_times=1,
+              preserve_symlinks=0, update=0, verbose=1, dry_run=0):
+    """Copy an entire directory tree 'src' to a new location 'dst'.
+
+    Both 'src' and 'dst' must be directory names.  If 'src' is not a
+    directory, raise DistutilsFileError.  If 'dst' does not exist, it is
+    created with 'mkpath()'.  The end result of the copy is that every
+    file in 'src' is copied to 'dst', and directories under 'src' are
+    recursively copied to 'dst'.  Return the list of files that were
+    copied or might have been copied, using their output name.  The
+    return value is unaffected by 'update' or 'dry_run': it is simply
+    the list of all files under 'src', with the names changed to be
+    under 'dst'.
+
+    'preserve_mode' and 'preserve_times' are the same as for
+    'copy_file'; note that they only apply to regular files, not to
+    directories.  If 'preserve_symlinks' is true, symlinks will be
+    copied as symlinks (on platforms that support them!); otherwise
+    (the default), the destination of the symlink will be copied.
+    'update' and 'verbose' are the same as for 'copy_file'.
+    """
+    from distutils.file_util import copy_file
+
+    if not dry_run and not os.path.isdir(src):
+        raise DistutilsFileError(
+              "cannot copy tree '%s': not a directory" % src)
+    try:
+        names = os.listdir(src)
+    except OSError as e:
+        if dry_run:
+            names = []
+        else:
+            raise DistutilsFileError(
+                  "error listing files in '%s': %s" % (src, e.strerror))
+
+    if not dry_run:
+        mkpath(dst, verbose=verbose)
+
+    outputs = []
+
+    for n in names:
+        src_name = os.path.join(src, n)
+        dst_name = os.path.join(dst, n)
+
+        if n.startswith('.nfs'):
+            # skip NFS rename files
+            continue
+
+        if preserve_symlinks and os.path.islink(src_name):
+            link_dest = os.readlink(src_name)
+            if verbose >= 1:
+                log.info("linking %s -> %s", dst_name, link_dest)
+            if not dry_run:
+                os.symlink(link_dest, dst_name)
+            outputs.append(dst_name)
+
+        elif os.path.isdir(src_name):
+            outputs.extend(
+                copy_tree(src_name, dst_name, preserve_mode,
+                          preserve_times, preserve_symlinks, update,
+                          verbose=verbose, dry_run=dry_run))
+        else:
+            copy_file(src_name, dst_name, preserve_mode,
+                      preserve_times, update, verbose=verbose,
+                      dry_run=dry_run)
+            outputs.append(dst_name)
+
+    return outputs
+
+def _build_cmdtuple(path, cmdtuples):
+    """Helper for remove_tree()."""
+    for f in os.listdir(path):
+        real_f = os.path.join(path,f)
+        if os.path.isdir(real_f) and not os.path.islink(real_f):
+            _build_cmdtuple(real_f, cmdtuples)
+        else:
+            cmdtuples.append((os.remove, real_f))
+    cmdtuples.append((os.rmdir, path))
+
+def remove_tree(directory, verbose=1, dry_run=0):
+    """Recursively remove an entire directory tree.
+
+    Any errors are ignored (apart from being reported to stdout if 'verbose'
+    is true).
+    """
+    global _path_created
+
+    if verbose >= 1:
+        log.info("removing '%s' (and everything under it)", directory)
+    if dry_run:
+        return
+    cmdtuples = []
+    _build_cmdtuple(directory, cmdtuples)
+    for cmd in cmdtuples:
+        try:
+            cmd[0](cmd[1])
+            # remove dir from cache if it's already there
+            abspath = os.path.abspath(cmd[1])
+            if abspath in _path_created:
+                del _path_created[abspath]
+        except OSError as exc:
+            log.warn("error removing %s: %s", directory, exc)
+
+def ensure_relative(path):
+    """Take the full path 'path', and make it a relative path.
+
+    This is useful to make 'path' the second argument to os.path.join().
+    """
+    drive, path = os.path.splitdrive(path)
+    if path[0:1] == os.sep:
+        path = drive + path[1:]
+    return path

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/errors.py

@@ -0,0 +1,97 @@
+"""distutils.errors
+
+Provides exceptions used by the Distutils modules.  Note that Distutils
+modules may raise standard exceptions; in particular, SystemExit is
+usually raised for errors that are obviously the end-user's fault
+(eg. bad command-line arguments).
+
+This module is safe to use in "from ... import *" mode; it only exports
+symbols whose names start with "Distutils" and end with "Error"."""
+
+class DistutilsError (Exception):
+    """The root of all Distutils evil."""
+    pass
+
+class DistutilsModuleError (DistutilsError):
+    """Unable to load an expected module, or to find an expected class
+    within some module (in particular, command modules and classes)."""
+    pass
+
+class DistutilsClassError (DistutilsError):
+    """Some command class (or possibly distribution class, if anyone
+    feels a need to subclass Distribution) is found not to be holding
+    up its end of the bargain, ie. implementing some part of the
+    "command "interface."""
+    pass
+
+class DistutilsGetoptError (DistutilsError):
+    """The option table provided to 'fancy_getopt()' is bogus."""
+    pass
+
+class DistutilsArgError (DistutilsError):
+    """Raised by fancy_getopt in response to getopt.error -- ie. an
+    error in the command line usage."""
+    pass
+
+class DistutilsFileError (DistutilsError):
+    """Any problems in the filesystem: expected file not found, etc.
+    Typically this is for problems that we detect before OSError
+    could be raised."""
+    pass
+
+class DistutilsOptionError (DistutilsError):
+    """Syntactic/semantic errors in command options, such as use of
+    mutually conflicting options, or inconsistent options,
+    badly-spelled values, etc.  No distinction is made between option
+    values originating in the setup script, the command line, config
+    files, or what-have-you -- but if we *know* something originated in
+    the setup script, we'll raise DistutilsSetupError instead."""
+    pass
+
+class DistutilsSetupError (DistutilsError):
+    """For errors that can be definitely blamed on the setup script,
+    such as invalid keyword arguments to 'setup()'."""
+    pass
+
+class DistutilsPlatformError (DistutilsError):
+    """We don't know how to do something on the current platform (but
+    we do know how to do it on some platform) -- eg. trying to compile
+    C files on a platform not supported by a CCompiler subclass."""
+    pass
+
+class DistutilsExecError (DistutilsError):
+    """Any problems executing an external program (such as the C
+    compiler, when compiling C files)."""
+    pass
+
+class DistutilsInternalError (DistutilsError):
+    """Internal inconsistencies or impossibilities (obviously, this
+    should never be seen if the code is working!)."""
+    pass
+
+class DistutilsTemplateError (DistutilsError):
+    """Syntax error in a file list template."""
+
+class DistutilsByteCompileError(DistutilsError):
+    """Byte compile error."""
+
+# Exception classes used by the CCompiler implementation classes
+class CCompilerError (Exception):
+    """Some compile/link operation failed."""
+
+class PreprocessError (CCompilerError):
+    """Failure to preprocess one or more C/C++ files."""
+
+class CompileError (CCompilerError):
+    """Failure to compile one or more C/C++ source files."""
+
+class LibError (CCompilerError):
+    """Failure to create a static library from one or more C/C++ object
+    files."""
+
+class LinkError (CCompilerError):
+    """Failure to link one or more C/C++ object files into an executable
+    or shared library file."""
+
+class UnknownFileError (CCompilerError):
+    """Attempt to process an unknown file type."""

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/extension.py

@@ -0,0 +1,240 @@
+"""distutils.extension
+
+Provides the Extension class, used to describe C/C++ extension
+modules in setup scripts."""
+
+import os
+import warnings
+
+# This class is really only used by the "build_ext" command, so it might
+# make sense to put it in distutils.command.build_ext.  However, that
+# module is already big enough, and I want to make this class a bit more
+# complex to simplify some common cases ("foo" module in "foo.c") and do
+# better error-checking ("foo.c" actually exists).
+#
+# Also, putting this in build_ext.py means every setup script would have to
+# import that large-ish module (indirectly, through distutils.core) in
+# order to do anything.
+
+class Extension:
+    """Just a collection of attributes that describes an extension
+    module and everything needed to build it (hopefully in a portable
+    way, but there are hooks that let you be as unportable as you need).
+
+    Instance attributes:
+      name : string
+        the full name of the extension, including any packages -- ie.
+        *not* a filename or pathname, but Python dotted name
+      sources : [string]
+        list of source filenames, relative to the distribution root
+        (where the setup script lives), in Unix form (slash-separated)
+        for portability.  Source files may be C, C++, SWIG (.i),
+        platform-specific resource files, or whatever else is recognized
+        by the "build_ext" command as source for a Python extension.
+      include_dirs : [string]
+        list of directories to search for C/C++ header files (in Unix
+        form for portability)
+      define_macros : [(name : string, value : string|None)]
+        list of macros to define; each macro is defined using a 2-tuple,
+        where 'value' is either the string to define it to or None to
+        define it without a particular value (equivalent of "#define
+        FOO" in source or -DFOO on Unix C compiler command line)
+      undef_macros : [string]
+        list of macros to undefine explicitly
+      library_dirs : [string]
+        list of directories to search for C/C++ libraries at link time
+      libraries : [string]
+        list of library names (not filenames or paths) to link against
+      runtime_library_dirs : [string]
+        list of directories to search for C/C++ libraries at run time
+        (for shared extensions, this is when the extension is loaded)
+      extra_objects : [string]
+        list of extra files to link with (eg. object files not implied
+        by 'sources', static library that must be explicitly specified,
+        binary resource files, etc.)
+      extra_compile_args : [string]
+        any extra platform- and compiler-specific information to use
+        when compiling the source files in 'sources'.  For platforms and
+        compilers where "command line" makes sense, this is typically a
+        list of command-line arguments, but for other platforms it could
+        be anything.
+      extra_link_args : [string]
+        any extra platform- and compiler-specific information to use
+        when linking object files together to create the extension (or
+        to create a new static Python interpreter).  Similar
+        interpretation as for 'extra_compile_args'.
+      export_symbols : [string]
+        list of symbols to be exported from a shared extension.  Not
+        used on all platforms, and not generally necessary for Python
+        extensions, which typically export exactly one symbol: "init" +
+        extension_name.
+      swig_opts : [string]
+        any extra options to pass to SWIG if a source file has the .i
+        extension.
+      depends : [string]
+        list of files that the extension depends on
+      language : string
+        extension language (i.e. "c", "c++", "objc"). Will be detected
+        from the source extensions if not provided.
+      optional : boolean
+        specifies that a build failure in the extension should not abort the
+        build process, but simply not install the failing extension.
+    """
+
+    # When adding arguments to this constructor, be sure to update
+    # setup_keywords in core.py.
+    def __init__(self, name, sources,
+                  include_dirs=None,
+                  define_macros=None,
+                  undef_macros=None,
+                  library_dirs=None,
+                  libraries=None,
+                  runtime_library_dirs=None,
+                  extra_objects=None,
+                  extra_compile_args=None,
+                  extra_link_args=None,
+                  export_symbols=None,
+                  swig_opts = None,
+                  depends=None,
+                  language=None,
+                  optional=None,
+                  **kw                      # To catch unknown keywords
+                 ):
+        if not isinstance(name, str):
+            raise AssertionError("'name' must be a string")
+        if not (isinstance(sources, list) and
+                all(isinstance(v, str) for v in sources)):
+            raise AssertionError("'sources' must be a list of strings")
+
+        self.name = name
+        self.sources = sources
+        self.include_dirs = include_dirs or []
+        self.define_macros = define_macros or []
+        self.undef_macros = undef_macros or []
+        self.library_dirs = library_dirs or []
+        self.libraries = libraries or []
+        self.runtime_library_dirs = runtime_library_dirs or []
+        self.extra_objects = extra_objects or []
+        self.extra_compile_args = extra_compile_args or []
+        self.extra_link_args = extra_link_args or []
+        self.export_symbols = export_symbols or []
+        self.swig_opts = swig_opts or []
+        self.depends = depends or []
+        self.language = language
+        self.optional = optional
+
+        # If there are unknown keyword options, warn about them
+        if len(kw) > 0:
+            options = [repr(option) for option in kw]
+            options = ', '.join(sorted(options))
+            msg = "Unknown Extension options: %s" % options
+            warnings.warn(msg)
+
+    def __repr__(self):
+        return '<%s.%s(%r) at %#x>' % (
+            self.__class__.__module__,
+            self.__class__.__qualname__,
+            self.name,
+            id(self))
+
+
+def read_setup_file(filename):
+    """Reads a Setup file and returns Extension instances."""
+    from distutils.sysconfig import (parse_makefile, expand_makefile_vars,
+                                     _variable_rx)
+
+    from distutils.text_file import TextFile
+    from distutils.util import split_quoted
+
+    # First pass over the file to gather "VAR = VALUE" assignments.
+    vars = parse_makefile(filename)
+
+    # Second pass to gobble up the real content: lines of the form
+    #   <module> ... [<sourcefile> ...] [<cpparg> ...] [<library> ...]
+    file = TextFile(filename,
+                    strip_comments=1, skip_blanks=1, join_lines=1,
+                    lstrip_ws=1, rstrip_ws=1)
+    try:
+        extensions = []
+
+        while True:
+            line = file.readline()
+            if line is None:                # eof
+                break
+            if _variable_rx.match(line):    # VAR=VALUE, handled in first pass
+                continue
+
+            if line[0] == line[-1] == "*":
+                file.warn("'%s' lines not handled yet" % line)
+                continue
+
+            line = expand_makefile_vars(line, vars)
+            words = split_quoted(line)
+
+            # NB. this parses a slightly different syntax than the old
+            # makesetup script: here, there must be exactly one extension per
+            # line, and it must be the first word of the line.  I have no idea
+            # why the old syntax supported multiple extensions per line, as
+            # they all wind up being the same.
+
+            module = words[0]
+            ext = Extension(module, [])
+            append_next_word = None
+
+            for word in words[1:]:
+                if append_next_word is not None:
+                    append_next_word.append(word)
+                    append_next_word = None
+                    continue
+
+                suffix = os.path.splitext(word)[1]
+                switch = word[0:2] ; value = word[2:]
+
+                if suffix in (".c", ".cc", ".cpp", ".cxx", ".c++", ".m", ".mm"):
+                    # hmm, should we do something about C vs. C++ sources?
+                    # or leave it up to the CCompiler implementation to
+                    # worry about?
+                    ext.sources.append(word)
+                elif switch == "-I":
+                    ext.include_dirs.append(value)
+                elif switch == "-D":
+                    equals = value.find("=")
+                    if equals == -1:        # bare "-DFOO" -- no value
+                        ext.define_macros.append((value, None))
+                    else:                   # "-DFOO=blah"
+                        ext.define_macros.append((value[0:equals],
+                                                  value[equals+2:]))
+                elif switch == "-U":
+                    ext.undef_macros.append(value)
+                elif switch == "-C":        # only here 'cause makesetup has it!
+                    ext.extra_compile_args.append(word)
+                elif switch == "-l":
+                    ext.libraries.append(value)
+                elif switch == "-L":
+                    ext.library_dirs.append(value)
+                elif switch == "-R":
+                    ext.runtime_library_dirs.append(value)
+                elif word == "-rpath":
+                    append_next_word = ext.runtime_library_dirs
+                elif word == "-Xlinker":
+                    append_next_word = ext.extra_link_args
+                elif word == "-Xcompiler":
+                    append_next_word = ext.extra_compile_args
+                elif switch == "-u":
+                    ext.extra_link_args.append(word)
+                    if not value:
+                        append_next_word = ext.extra_link_args
+                elif suffix in (".a", ".so", ".sl", ".o", ".dylib"):
+                    # NB. a really faithful emulation of makesetup would
+                    # append a .o file to extra_objects only if it
+                    # had a slash in it; otherwise, it would s/.o/.c/
+                    # and append it to sources.  Hmmmm.
+                    ext.extra_objects.append(word)
+                else:
+                    file.warn("unrecognized argument '%s'" % word)
+
+            extensions.append(ext)
+    finally:
+        file.close()
+
+    return extensions

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/fancy_getopt.py

@@ -0,0 +1,457 @@
+"""distutils.fancy_getopt
+
+Wrapper around the standard getopt module that provides the following
+additional features:
+  * short and long options are tied together
+  * options have help strings, so fancy_getopt could potentially
+    create a complete usage summary
+  * options set attributes of a passed-in object
+"""
+
+import sys, string, re
+import getopt
+from distutils.errors import *
+
+# Much like command_re in distutils.core, this is close to but not quite
+# the same as a Python NAME -- except, in the spirit of most GNU
+# utilities, we use '-' in place of '_'.  (The spirit of LISP lives on!)
+# The similarities to NAME are again not a coincidence...
+longopt_pat = r'[a-zA-Z](?:[a-zA-Z0-9-]*)'
+longopt_re = re.compile(r'^%s$' % longopt_pat)
+
+# For recognizing "negative alias" options, eg. "quiet=!verbose"
+neg_alias_re = re.compile("^(%s)=!(%s)$" % (longopt_pat, longopt_pat))
+
+# This is used to translate long options to legitimate Python identifiers
+# (for use as attributes of some object).
+longopt_xlate = str.maketrans('-', '_')
+
+class FancyGetopt:
+    """Wrapper around the standard 'getopt()' module that provides some
+    handy extra functionality:
+      * short and long options are tied together
+      * options have help strings, and help text can be assembled
+        from them
+      * options set attributes of a passed-in object
+      * boolean options can have "negative aliases" -- eg. if
+        --quiet is the "negative alias" of --verbose, then "--quiet"
+        on the command line sets 'verbose' to false
+    """
+
+    def __init__(self, option_table=None):
+        # The option table is (currently) a list of tuples.  The
+        # tuples may have 3 or four values:
+        #   (long_option, short_option, help_string [, repeatable])
+        # if an option takes an argument, its long_option should have '='
+        # appended; short_option should just be a single character, no ':'
+        # in any case.  If a long_option doesn't have a corresponding
+        # short_option, short_option should be None.  All option tuples
+        # must have long options.
+        self.option_table = option_table
+
+        # 'option_index' maps long option names to entries in the option
+        # table (ie. those 3-tuples).
+        self.option_index = {}
+        if self.option_table:
+            self._build_index()
+
+        # 'alias' records (duh) alias options; {'foo': 'bar'} means
+        # --foo is an alias for --bar
+        self.alias = {}
+
+        # 'negative_alias' keeps track of options that are the boolean
+        # opposite of some other option
+        self.negative_alias = {}
+
+        # These keep track of the information in the option table.  We
+        # don't actually populate these structures until we're ready to
+        # parse the command-line, since the 'option_table' passed in here
+        # isn't necessarily the final word.
+        self.short_opts = []
+        self.long_opts = []
+        self.short2long = {}
+        self.attr_name = {}
+        self.takes_arg = {}
+
+        # And 'option_order' is filled up in 'getopt()'; it records the
+        # original order of options (and their values) on the command-line,
+        # but expands short options, converts aliases, etc.
+        self.option_order = []
+
+    def _build_index(self):
+        self.option_index.clear()
+        for option in self.option_table:
+            self.option_index[option[0]] = option
+
+    def set_option_table(self, option_table):
+        self.option_table = option_table
+        self._build_index()
+
+    def add_option(self, long_option, short_option=None, help_string=None):
+        if long_option in self.option_index:
+            raise DistutilsGetoptError(
+                  "option conflict: already an option '%s'" % long_option)
+        else:
+            option = (long_option, short_option, help_string)
+            self.option_table.append(option)
+            self.option_index[long_option] = option
+
+    def has_option(self, long_option):
+        """Return true if the option table for this parser has an
+        option with long name 'long_option'."""
+        return long_option in self.option_index
+
+    def get_attr_name(self, long_option):
+        """Translate long option name 'long_option' to the form it
+        has as an attribute of some object: ie., translate hyphens
+        to underscores."""
+        return long_option.translate(longopt_xlate)
+
+    def _check_alias_dict(self, aliases, what):
+        assert isinstance(aliases, dict)
+        for (alias, opt) in aliases.items():
+            if alias not in self.option_index:
+                raise DistutilsGetoptError(("invalid %s '%s': "
+                       "option '%s' not defined") % (what, alias, alias))
+            if opt not in self.option_index:
+                raise DistutilsGetoptError(("invalid %s '%s': "
+                       "aliased option '%s' not defined") % (what, alias, opt))
+
+    def set_aliases(self, alias):
+        """Set the aliases for this option parser."""
+        self._check_alias_dict(alias, "alias")
+        self.alias = alias
+
+    def set_negative_aliases(self, negative_alias):
+        """Set the negative aliases for this option parser.
+        'negative_alias' should be a dictionary mapping option names to
+        option names, both the key and value must already be defined
+        in the option table."""
+        self._check_alias_dict(negative_alias, "negative alias")
+        self.negative_alias = negative_alias
+
+    def _grok_option_table(self):
+        """Populate the various data structures that keep tabs on the
+        option table.  Called by 'getopt()' before it can do anything
+        worthwhile.
+        """
+        self.long_opts = []
+        self.short_opts = []
+        self.short2long.clear()
+        self.repeat = {}
+
+        for option in self.option_table:
+            if len(option) == 3:
+                long, short, help = option
+                repeat = 0
+            elif len(option) == 4:
+                long, short, help, repeat = option
+            else:
+                # the option table is part of the code, so simply
+                # assert that it is correct
+                raise ValueError("invalid option tuple: %r" % (option,))
+
+            # Type- and value-check the option names
+            if not isinstance(long, str) or len(long) < 2:
+                raise DistutilsGetoptError(("invalid long option '%s': "
+                       "must be a string of length >= 2") % long)
+
+            if (not ((short is None) or
+                     (isinstance(short, str) and len(short) == 1))):
+                raise DistutilsGetoptError("invalid short option '%s': "
+                       "must a single character or None" % short)
+
+            self.repeat[long] = repeat
+            self.long_opts.append(long)
+
+            if long[-1] == '=':             # option takes an argument?
+                if short: short = short + ':'
+                long = long[0:-1]
+                self.takes_arg[long] = 1
+            else:
+                # Is option is a "negative alias" for some other option (eg.
+                # "quiet" == "!verbose")?
+                alias_to = self.negative_alias.get(long)
+                if alias_to is not None:
+                    if self.takes_arg[alias_to]:
+                        raise DistutilsGetoptError(
+                              "invalid negative alias '%s': "
+                              "aliased option '%s' takes a value"
+                              % (long, alias_to))
+
+                    self.long_opts[-1] = long # XXX redundant?!
+                self.takes_arg[long] = 0
+
+            # If this is an alias option, make sure its "takes arg" flag is
+            # the same as the option it's aliased to.
+            alias_to = self.alias.get(long)
+            if alias_to is not None:
+                if self.takes_arg[long] != self.takes_arg[alias_to]:
+                    raise DistutilsGetoptError(
+                          "invalid alias '%s': inconsistent with "
+                          "aliased option '%s' (one of them takes a value, "
+                          "the other doesn't"
+                          % (long, alias_to))
+
+            # Now enforce some bondage on the long option name, so we can
+            # later translate it to an attribute name on some object.  Have
+            # to do this a bit late to make sure we've removed any trailing
+            # '='.
+            if not longopt_re.match(long):
+                raise DistutilsGetoptError(
+                       "invalid long option name '%s' "
+                       "(must be letters, numbers, hyphens only" % long)
+
+            self.attr_name[long] = self.get_attr_name(long)
+            if short:
+                self.short_opts.append(short)
+                self.short2long[short[0]] = long
+
+    def getopt(self, args=None, object=None):
+        """Parse command-line options in args. Store as attributes on object.
+
+        If 'args' is None or not supplied, uses 'sys.argv[1:]'.  If
+        'object' is None or not supplied, creates a new OptionDummy
+        object, stores option values there, and returns a tuple (args,
+        object).  If 'object' is supplied, it is modified in place and
+        'getopt()' just returns 'args'; in both cases, the returned
+        'args' is a modified copy of the passed-in 'args' list, which
+        is left untouched.
+        """
+        if args is None:
+            args = sys.argv[1:]
+        if object is None:
+            object = OptionDummy()
+            created_object = True
+        else:
+            created_object = False
+
+        self._grok_option_table()
+
+        short_opts = ' '.join(self.short_opts)
+        try:
+            opts, args = getopt.getopt(args, short_opts, self.long_opts)
+        except getopt.error as msg:
+            raise DistutilsArgError(msg)
+
+        for opt, val in opts:
+            if len(opt) == 2 and opt[0] == '-': # it's a short option
+                opt = self.short2long[opt[1]]
+            else:
+                assert len(opt) > 2 and opt[:2] == '--'
+                opt = opt[2:]
+
+            alias = self.alias.get(opt)
+            if alias:
+                opt = alias
+
+            if not self.takes_arg[opt]:     # boolean option?
+                assert val == '', "boolean option can't have value"
+                alias = self.negative_alias.get(opt)
+                if alias:
+                    opt = alias
+                    val = 0
+                else:
+                    val = 1
+
+            attr = self.attr_name[opt]
+            # The only repeating option at the moment is 'verbose'.
+            # It has a negative option -q quiet, which should set verbose = 0.
+            if val and self.repeat.get(attr) is not None:
+                val = getattr(object, attr, 0) + 1
+            setattr(object, attr, val)
+            self.option_order.append((opt, val))
+
+        # for opts
+        if created_object:
+            return args, object
+        else:
+            return args
+
+    def get_option_order(self):
+        """Returns the list of (option, value) tuples processed by the
+        previous run of 'getopt()'.  Raises RuntimeError if
+        'getopt()' hasn't been called yet.
+        """
+        if self.option_order is None:
+            raise RuntimeError("'getopt()' hasn't been called yet")
+        else:
+            return self.option_order
+
+    def generate_help(self, header=None):
+        """Generate help text (a list of strings, one per suggested line of
+        output) from the option table for this FancyGetopt object.
+        """
+        # Blithely assume the option table is good: probably wouldn't call
+        # 'generate_help()' unless you've already called 'getopt()'.
+
+        # First pass: determine maximum length of long option names
+        max_opt = 0
+        for option in self.option_table:
+            long = option[0]
+            short = option[1]
+            l = len(long)
+            if long[-1] == '=':
+                l = l - 1
+            if short is not None:
+                l = l + 5                   # " (-x)" where short == 'x'
+            if l > max_opt:
+                max_opt = l
+
+        opt_width = max_opt + 2 + 2 + 2     # room for indent + dashes + gutter
+
+        # Typical help block looks like this:
+        #   --foo       controls foonabulation
+        # Help block for longest option looks like this:
+        #   --flimflam  set the flim-flam level
+        # and with wrapped text:
+        #   --flimflam  set the flim-flam level (must be between
+        #               0 and 100, except on Tuesdays)
+        # Options with short names will have the short name shown (but
+        # it doesn't contribute to max_opt):
+        #   --foo (-f)  controls foonabulation
+        # If adding the short option would make the left column too wide,
+        # we push the explanation off to the next line
+        #   --flimflam (-l)
+        #               set the flim-flam level
+        # Important parameters:
+        #   - 2 spaces before option block start lines
+        #   - 2 dashes for each long option name
+        #   - min. 2 spaces between option and explanation (gutter)
+        #   - 5 characters (incl. space) for short option name
+
+        # Now generate lines of help text.  (If 80 columns were good enough
+        # for Jesus, then 78 columns are good enough for me!)
+        line_width = 78
+        text_width = line_width - opt_width
+        big_indent = ' ' * opt_width
+        if header:
+            lines = [header]
+        else:
+            lines = ['Option summary:']
+
+        for option in self.option_table:
+            long, short, help = option[:3]
+            text = wrap_text(help, text_width)
+            if long[-1] == '=':
+                long = long[0:-1]
+
+            # Case 1: no short option at all (makes life easy)
+            if short is None:
+                if text:
+                    lines.append("  --%-*s  %s" % (max_opt, long, text[0]))
+                else:
+                    lines.append("  --%-*s  " % (max_opt, long))
+
+            # Case 2: we have a short option, so we have to include it
+            # just after the long option
+            else:
+                opt_names = "%s (-%s)" % (long, short)
+                if text:
+                    lines.append("  --%-*s  %s" %
+                                 (max_opt, opt_names, text[0]))
+                else:
+                    lines.append("  --%-*s" % opt_names)
+
+            for l in text[1:]:
+                lines.append(big_indent + l)
+        return lines
+
+    def print_help(self, header=None, file=None):
+        if file is None:
+            file = sys.stdout
+        for line in self.generate_help(header):
+            file.write(line + "\n")
+
+
+def fancy_getopt(options, negative_opt, object, args):
+    parser = FancyGetopt(options)
+    parser.set_negative_aliases(negative_opt)
+    return parser.getopt(args, object)
+
+
+WS_TRANS = {ord(_wschar) : ' ' for _wschar in string.whitespace}
+
+def wrap_text(text, width):
+    """wrap_text(text : string, width : int) -> [string]
+
+    Split 'text' into multiple lines of no more than 'width' characters
+    each, and return the list of strings that results.
+    """
+    if text is None:
+        return []
+    if len(text) <= width:
+        return [text]
+
+    text = text.expandtabs()
+    text = text.translate(WS_TRANS)
+    chunks = re.split(r'( +|-+)', text)
+    chunks = [ch for ch in chunks if ch] # ' - ' results in empty strings
+    lines = []
+
+    while chunks:
+        cur_line = []                   # list of chunks (to-be-joined)
+        cur_len = 0                     # length of current line
+
+        while chunks:
+            l = len(chunks[0])
+            if cur_len + l <= width:    # can squeeze (at least) this chunk in
+                cur_line.append(chunks[0])
+                del chunks[0]
+                cur_len = cur_len + l
+            else:                       # this line is full
+                # drop last chunk if all space
+                if cur_line and cur_line[-1][0] == ' ':
+                    del cur_line[-1]
+                break
+
+        if chunks:                      # any chunks left to process?
+            # if the current line is still empty, then we had a single
+            # chunk that's too big too fit on a line -- so we break
+            # down and break it up at the line width
+            if cur_len == 0:
+                cur_line.append(chunks[0][0:width])
+                chunks[0] = chunks[0][width:]
+
+            # all-whitespace chunks at the end of a line can be discarded
+            # (and we know from the re.split above that if a chunk has
+            # *any* whitespace, it is *all* whitespace)
+            if chunks[0][0] == ' ':
+                del chunks[0]
+
+        # and store this line in the list-of-all-lines -- as a single
+        # string, of course!
+        lines.append(''.join(cur_line))
+
+    return lines
+
+
+def translate_longopt(opt):
+    """Convert a long option name to a valid Python identifier by
+    changing "-" to "_".
+    """
+    return opt.translate(longopt_xlate)
+
+
+class OptionDummy:
+    """Dummy class just used as a place to hold command-line option
+    values as instance attributes."""
+
+    def __init__(self, options=[]):
+        """Create a new OptionDummy instance.  The attributes listed in
+        'options' will be initialized to None."""
+        for opt in options:
+            setattr(self, opt, None)
+
+
+if __name__ == "__main__":
+    text = """\
+Tra-la-la, supercalifragilisticexpialidocious.
+How *do* you spell that odd word, anyways?
+(Someone ask Mary -- she'll know [or she'll
+say, "How should I know?"].)"""
+
+    for w in (10, 20, 30, 40):
+        print("width: %d" % w)
+        print("\n".join(wrap_text(text, w)))
+        print()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/file_util.py

@@ -0,0 +1,238 @@
+"""distutils.file_util
+
+Utility functions for operating on single files.
+"""
+
+import os
+from distutils.errors import DistutilsFileError
+from distutils import log
+
+# for generating verbose output in 'copy_file()'
+_copy_action = { None:   'copying',
+                 'hard': 'hard linking',
+                 'sym':  'symbolically linking' }
+
+
+def _copy_file_contents(src, dst, buffer_size=16*1024):
+    """Copy the file 'src' to 'dst'; both must be filenames.  Any error
+    opening either file, reading from 'src', or writing to 'dst', raises
+    DistutilsFileError.  Data is read/written in chunks of 'buffer_size'
+    bytes (default 16k).  No attempt is made to handle anything apart from
+    regular files.
+    """
+    # Stolen from shutil module in the standard library, but with
+    # custom error-handling added.
+    fsrc = None
+    fdst = None
+    try:
+        try:
+            fsrc = open(src, 'rb')
+        except OSError as e:
+            raise DistutilsFileError("could not open '%s': %s" % (src, e.strerror))
+
+        if os.path.exists(dst):
+            try:
+                os.unlink(dst)
+            except OSError as e:
+                raise DistutilsFileError(
+                      "could not delete '%s': %s" % (dst, e.strerror))
+
+        try:
+            fdst = open(dst, 'wb')
+        except OSError as e:
+            raise DistutilsFileError(
+                  "could not create '%s': %s" % (dst, e.strerror))
+
+        while True:
+            try:
+                buf = fsrc.read(buffer_size)
+            except OSError as e:
+                raise DistutilsFileError(
+                      "could not read from '%s': %s" % (src, e.strerror))
+
+            if not buf:
+                break
+
+            try:
+                fdst.write(buf)
+            except OSError as e:
+                raise DistutilsFileError(
+                      "could not write to '%s': %s" % (dst, e.strerror))
+    finally:
+        if fdst:
+            fdst.close()
+        if fsrc:
+            fsrc.close()
+
+def copy_file(src, dst, preserve_mode=1, preserve_times=1, update=0,
+              link=None, verbose=1, dry_run=0):
+    """Copy a file 'src' to 'dst'.  If 'dst' is a directory, then 'src' is
+    copied there with the same name; otherwise, it must be a filename.  (If
+    the file exists, it will be ruthlessly clobbered.)  If 'preserve_mode'
+    is true (the default), the file's mode (type and permission bits, or
+    whatever is analogous on the current platform) is copied.  If
+    'preserve_times' is true (the default), the last-modified and
+    last-access times are copied as well.  If 'update' is true, 'src' will
+    only be copied if 'dst' does not exist, or if 'dst' does exist but is
+    older than 'src'.
+
+    'link' allows you to make hard links (os.link) or symbolic links
+    (os.symlink) instead of copying: set it to "hard" or "sym"; if it is
+    None (the default), files are copied.  Don't set 'link' on systems that
+    don't support it: 'copy_file()' doesn't check if hard or symbolic
+    linking is available. If hardlink fails, falls back to
+    _copy_file_contents().
+
+    Under Mac OS, uses the native file copy function in macostools; on
+    other systems, uses '_copy_file_contents()' to copy file contents.
+
+    Return a tuple (dest_name, copied): 'dest_name' is the actual name of
+    the output file, and 'copied' is true if the file was copied (or would
+    have been copied, if 'dry_run' true).
+    """
+    # XXX if the destination file already exists, we clobber it if
+    # copying, but blow up if linking.  Hmmm.  And I don't know what
+    # macostools.copyfile() does.  Should definitely be consistent, and
+    # should probably blow up if destination exists and we would be
+    # changing it (ie. it's not already a hard/soft link to src OR
+    # (not update) and (src newer than dst).
+
+    from distutils.dep_util import newer
+    from stat import ST_ATIME, ST_MTIME, ST_MODE, S_IMODE
+
+    if not os.path.isfile(src):
+        raise DistutilsFileError(
+              "can't copy '%s': doesn't exist or not a regular file" % src)
+
+    if os.path.isdir(dst):
+        dir = dst
+        dst = os.path.join(dst, os.path.basename(src))
+    else:
+        dir = os.path.dirname(dst)
+
+    if update and not newer(src, dst):
+        if verbose >= 1:
+            log.debug("not copying %s (output up-to-date)", src)
+        return (dst, 0)
+
+    try:
+        action = _copy_action[link]
+    except KeyError:
+        raise ValueError("invalid value '%s' for 'link' argument" % link)
+
+    if verbose >= 1:
+        if os.path.basename(dst) == os.path.basename(src):
+            log.info("%s %s -> %s", action, src, dir)
+        else:
+            log.info("%s %s -> %s", action, src, dst)
+
+    if dry_run:
+        return (dst, 1)
+
+    # If linking (hard or symbolic), use the appropriate system call
+    # (Unix only, of course, but that's the caller's responsibility)
+    elif link == 'hard':
+        if not (os.path.exists(dst) and os.path.samefile(src, dst)):
+            try:
+                os.link(src, dst)
+                return (dst, 1)
+            except OSError:
+                # If hard linking fails, fall back on copying file
+                # (some special filesystems don't support hard linking
+                #  even under Unix, see issue #8876).
+                pass
+    elif link == 'sym':
+        if not (os.path.exists(dst) and os.path.samefile(src, dst)):
+            os.symlink(src, dst)
+            return (dst, 1)
+
+    # Otherwise (non-Mac, not linking), copy the file contents and
+    # (optionally) copy the times and mode.
+    _copy_file_contents(src, dst)
+    if preserve_mode or preserve_times:
+        st = os.stat(src)
+
+        # According to David Ascher <da@ski.org>, utime() should be done
+        # before chmod() (at least under NT).
+        if preserve_times:
+            os.utime(dst, (st[ST_ATIME], st[ST_MTIME]))
+        if preserve_mode:
+            os.chmod(dst, S_IMODE(st[ST_MODE]))
+
+    return (dst, 1)
+
+
+# XXX I suspect this is Unix-specific -- need porting help!
+def move_file (src, dst,
+               verbose=1,
+               dry_run=0):
+
+    """Move a file 'src' to 'dst'.  If 'dst' is a directory, the file will
+    be moved into it with the same name; otherwise, 'src' is just renamed
+    to 'dst'.  Return the new full name of the file.
+
+    Handles cross-device moves on Unix using 'copy_file()'.  What about
+    other systems???
+    """
+    from os.path import exists, isfile, isdir, basename, dirname
+    import errno
+
+    if verbose >= 1:
+        log.info("moving %s -> %s", src, dst)
+
+    if dry_run:
+        return dst
+
+    if not isfile(src):
+        raise DistutilsFileError("can't move '%s': not a regular file" % src)
+
+    if isdir(dst):
+        dst = os.path.join(dst, basename(src))
+    elif exists(dst):
+        raise DistutilsFileError(
+              "can't move '%s': destination '%s' already exists" %
+              (src, dst))
+
+    if not isdir(dirname(dst)):
+        raise DistutilsFileError(
+              "can't move '%s': destination '%s' not a valid path" %
+              (src, dst))
+
+    copy_it = False
+    try:
+        os.rename(src, dst)
+    except OSError as e:
+        (num, msg) = e.args
+        if num == errno.EXDEV:
+            copy_it = True
+        else:
+            raise DistutilsFileError(
+                  "couldn't move '%s' to '%s': %s" % (src, dst, msg))
+
+    if copy_it:
+        copy_file(src, dst, verbose=verbose)
+        try:
+            os.unlink(src)
+        except OSError as e:
+            (num, msg) = e.args
+            try:
+                os.unlink(dst)
+            except OSError:
+                pass
+            raise DistutilsFileError(
+                  "couldn't move '%s' to '%s' by copy/delete: "
+                  "delete '%s' failed: %s"
+                  % (src, dst, src, msg))
+    return dst
+
+
+def write_file (filename, contents):
+    """Create a file with the specified name and write 'contents' (a
+    sequence of strings without line terminators) to it.
+    """
+    f = open(filename, "w")
+    try:
+        for line in contents:
+            f.write(line + "\n")
+    finally:
+        f.close()

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/filelist.py

@@ -0,0 +1,355 @@
+"""distutils.filelist
+
+Provides the FileList class, used for poking about the filesystem
+and building lists of files.
+"""
+
+import os
+import re
+import fnmatch
+import functools
+
+from distutils.util import convert_path
+from distutils.errors import DistutilsTemplateError, DistutilsInternalError
+from distutils import log
+
+
+class FileList:
+    """A list of files built by on exploring the filesystem and filtered by
+    applying various patterns to what we find there.
+
+    Instance attributes:
+      dir
+        directory from which files will be taken -- only used if
+        'allfiles' not supplied to constructor
+      files
+        list of filenames currently being built/filtered/manipulated
+      allfiles
+        complete list of files under consideration (ie. without any
+        filtering applied)
+    """
+
+    def __init__(self, warn=None, debug_print=None):
+        # ignore argument to FileList, but keep them for backwards
+        # compatibility
+        self.allfiles = None
+        self.files = []
+
+    def set_allfiles(self, allfiles):
+        self.allfiles = allfiles
+
+    def findall(self, dir=os.curdir):
+        self.allfiles = findall(dir)
+
+    def debug_print(self, msg):
+        """Print 'msg' to stdout if the global DEBUG (taken from the
+        DISTUTILS_DEBUG environment variable) flag is true.
+        """
+        from distutils.debug import DEBUG
+        if DEBUG:
+            print(msg)
+
+    # Collection methods
+
+    def append(self, item):
+        self.files.append(item)
+
+    def extend(self, items):
+        self.files.extend(items)
+
+    def sort(self):
+        # Not a strict lexical sort!
+        sortable_files = sorted(map(os.path.split, self.files))
+        self.files = []
+        for sort_tuple in sortable_files:
+            self.files.append(os.path.join(*sort_tuple))
+
+    # Other miscellaneous utility methods
+
+    def remove_duplicates(self):
+        # Assumes list has been sorted!
+        for i in range(len(self.files) - 1, 0, -1):
+            if self.files[i] == self.files[i - 1]:
+                del self.files[i]
+
+    # "File template" methods
+
+    def _parse_template_line(self, line):
+        words = line.split()
+        action = words[0]
+
+        patterns = dir = dir_pattern = None
+
+        if action in ('include', 'exclude',
+                      'global-include', 'global-exclude'):
+            if len(words) < 2:
+                raise DistutilsTemplateError(
+                      "'%s' expects <pattern1> <pattern2> ..." % action)
+            patterns = [convert_path(w) for w in words[1:]]
+        elif action in ('recursive-include', 'recursive-exclude'):
+            if len(words) < 3:
+                raise DistutilsTemplateError(
+                      "'%s' expects <dir> <pattern1> <pattern2> ..." % action)
+            dir = convert_path(words[1])
+            patterns = [convert_path(w) for w in words[2:]]
+        elif action in ('graft', 'prune'):
+            if len(words) != 2:
+                raise DistutilsTemplateError(
+                      "'%s' expects a single <dir_pattern>" % action)
+            dir_pattern = convert_path(words[1])
+        else:
+            raise DistutilsTemplateError("unknown action '%s'" % action)
+
+        return (action, patterns, dir, dir_pattern)
+
+    def process_template_line(self, line):
+        # Parse the line: split it up, make sure the right number of words
+        # is there, and return the relevant words.  'action' is always
+        # defined: it's the first word of the line.  Which of the other
+        # three are defined depends on the action; it'll be either
+        # patterns, (dir and patterns), or (dir_pattern).
+        (action, patterns, dir, dir_pattern) = self._parse_template_line(line)
+
+        # OK, now we know that the action is valid and we have the
+        # right number of words on the line for that action -- so we
+        # can proceed with minimal error-checking.
+        if action == 'include':
+            self.debug_print("include " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.include_pattern(pattern, anchor=1):
+                    log.warn("warning: no files found matching '%s'",
+                             pattern)
+
+        elif action == 'exclude':
+            self.debug_print("exclude " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.exclude_pattern(pattern, anchor=1):
+                    log.warn(("warning: no previously-included files "
+                              "found matching '%s'"), pattern)
+
+        elif action == 'global-include':
+            self.debug_print("global-include " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.include_pattern(pattern, anchor=0):
+                    log.warn(("warning: no files found matching '%s' "
+                              "anywhere in distribution"), pattern)
+
+        elif action == 'global-exclude':
+            self.debug_print("global-exclude " + ' '.join(patterns))
+            for pattern in patterns:
+                if not self.exclude_pattern(pattern, anchor=0):
+                    log.warn(("warning: no previously-included files matching "
+                              "'%s' found anywhere in distribution"),
+                             pattern)
+
+        elif action == 'recursive-include':
+            self.debug_print("recursive-include %s %s" %
+                             (dir, ' '.join(patterns)))
+            for pattern in patterns:
+                if not self.include_pattern(pattern, prefix=dir):
+                    msg = (
+                        "warning: no files found matching '%s' "
+                        "under directory '%s'"
+                    )
+                    log.warn(msg, pattern, dir)
+
+        elif action == 'recursive-exclude':
+            self.debug_print("recursive-exclude %s %s" %
+                             (dir, ' '.join(patterns)))
+            for pattern in patterns:
+                if not self.exclude_pattern(pattern, prefix=dir):
+                    log.warn(("warning: no previously-included files matching "
+                              "'%s' found under directory '%s'"),
+                             pattern, dir)
+
+        elif action == 'graft':
+            self.debug_print("graft " + dir_pattern)
+            if not self.include_pattern(None, prefix=dir_pattern):
+                log.warn("warning: no directories found matching '%s'",
+                         dir_pattern)
+
+        elif action == 'prune':
+            self.debug_print("prune " + dir_pattern)
+            if not self.exclude_pattern(None, prefix=dir_pattern):
+                log.warn(("no previously-included directories found "
+                          "matching '%s'"), dir_pattern)
+        else:
+            raise DistutilsInternalError(
+                  "this cannot happen: invalid action '%s'" % action)
+
+    # Filtering/selection methods
+
+    def include_pattern(self, pattern, anchor=1, prefix=None, is_regex=0):
+        """Select strings (presumably filenames) from 'self.files' that
+        match 'pattern', a Unix-style wildcard (glob) pattern.  Patterns
+        are not quite the same as implemented by the 'fnmatch' module: '*'
+        and '?'  match non-special characters, where "special" is platform-
+        dependent: slash on Unix; colon, slash, and backslash on
+        DOS/Windows; and colon on Mac OS.
+
+        If 'anchor' is true (the default), then the pattern match is more
+        stringent: "*.py" will match "foo.py" but not "foo/bar.py".  If
+        'anchor' is false, both of these will match.
+
+        If 'prefix' is supplied, then only filenames starting with 'prefix'
+        (itself a pattern) and ending with 'pattern', with anything in between
+        them, will match.  'anchor' is ignored in this case.
+
+        If 'is_regex' is true, 'anchor' and 'prefix' are ignored, and
+        'pattern' is assumed to be either a string containing a regex or a
+        regex object -- no translation is done, the regex is just compiled
+        and used as-is.
+
+        Selected strings will be added to self.files.
+
+        Return True if files are found, False otherwise.
+        """
+        # XXX docstring lying about what the special chars are?
+        files_found = False
+        pattern_re = translate_pattern(pattern, anchor, prefix, is_regex)
+        self.debug_print("include_pattern: applying regex r'%s'" %
+                         pattern_re.pattern)
+
+        # delayed loading of allfiles list
+        if self.allfiles is None:
+            self.findall()
+
+        for name in self.allfiles:
+            if pattern_re.search(name):
+                self.debug_print(" adding " + name)
+                self.files.append(name)
+                files_found = True
+        return files_found
+
+    def exclude_pattern(
+            self, pattern, anchor=1, prefix=None, is_regex=0):
+        """Remove strings (presumably filenames) from 'files' that match
+        'pattern'.  Other parameters are the same as for
+        'include_pattern()', above.
+        The list 'self.files' is modified in place.
+        Return True if files are found, False otherwise.
+        """
+        files_found = False
+        pattern_re = translate_pattern(pattern, anchor, prefix, is_regex)
+        self.debug_print("exclude_pattern: applying regex r'%s'" %
+                         pattern_re.pattern)
+        for i in range(len(self.files)-1, -1, -1):
+            if pattern_re.search(self.files[i]):
+                self.debug_print(" removing " + self.files[i])
+                del self.files[i]
+                files_found = True
+        return files_found
+
+
+# Utility functions
+
+def _find_all_simple(path):
+    """
+    Find all files under 'path'
+    """
+    all_unique = _UniqueDirs.filter(os.walk(path, followlinks=True))
+    results = (
+        os.path.join(base, file)
+        for base, dirs, files in all_unique
+        for file in files
+    )
+    return filter(os.path.isfile, results)
+
+
+class _UniqueDirs(set):
+    """
+    Exclude previously-seen dirs from walk results,
+    avoiding infinite recursion.
+    Ref https://bugs.python.org/issue44497.
+    """
+    def __call__(self, walk_item):
+        """
+        Given an item from an os.walk result, determine
+        if the item represents a unique dir for this instance
+        and if not, prevent further traversal.
+        """
+        base, dirs, files = walk_item
+        stat = os.stat(base)
+        candidate = stat.st_dev, stat.st_ino
+        found = candidate in self
+        if found:
+            del dirs[:]
+        self.add(candidate)
+        return not found
+
+    @classmethod
+    def filter(cls, items):
+        return filter(cls(), items)
+
+
+def findall(dir=os.curdir):
+    """
+    Find all files under 'dir' and return the list of full filenames.
+    Unless dir is '.', return full filenames with dir prepended.
+    """
+    files = _find_all_simple(dir)
+    if dir == os.curdir:
+        make_rel = functools.partial(os.path.relpath, start=dir)
+        files = map(make_rel, files)
+    return list(files)
+
+
+def glob_to_re(pattern):
+    """Translate a shell-like glob pattern to a regular expression; return
+    a string containing the regex.  Differs from 'fnmatch.translate()' in
+    that '*' does not match "special characters" (which are
+    platform-specific).
+    """
+    pattern_re = fnmatch.translate(pattern)
+
+    # '?' and '*' in the glob pattern become '.' and '.*' in the RE, which
+    # IMHO is wrong -- '?' and '*' aren't supposed to match slash in Unix,
+    # and by extension they shouldn't match such "special characters" under
+    # any OS.  So change all non-escaped dots in the RE to match any
+    # character except the special characters (currently: just os.sep).
+    sep = os.sep
+    if os.sep == '\\':
+        # we're using a regex to manipulate a regex, so we need
+        # to escape the backslash twice
+        sep = r'\\\\'
+    escaped = r'\1[^%s]' % sep
+    pattern_re = re.sub(r'((?<!\\)(\\\\)*)\.', escaped, pattern_re)
+    return pattern_re
+
+
+def translate_pattern(pattern, anchor=1, prefix=None, is_regex=0):
+    """Translate a shell-like wildcard pattern to a compiled regular
+    expression.  Return the compiled regex.  If 'is_regex' true,
+    then 'pattern' is directly compiled to a regex (if it's a string)
+    or just returned as-is (assumes it's a regex object).
+    """
+    if is_regex:
+        if isinstance(pattern, str):
+            return re.compile(pattern)
+        else:
+            return pattern
+
+    # ditch start and end characters
+    start, _, end = glob_to_re('_').partition('_')
+
+    if pattern:
+        pattern_re = glob_to_re(pattern)
+        assert pattern_re.startswith(start) and pattern_re.endswith(end)
+    else:
+        pattern_re = ''
+
+    if prefix is not None:
+        prefix_re = glob_to_re(prefix)
+        assert prefix_re.startswith(start) and prefix_re.endswith(end)
+        prefix_re = prefix_re[len(start): len(prefix_re) - len(end)]
+        sep = os.sep
+        if os.sep == '\\':
+            sep = r'\\'
+        pattern_re = pattern_re[len(start): len(pattern_re) - len(end)]
+        pattern_re = r'%s\A%s%s.*%s%s' % (
+            start, prefix_re, sep, pattern_re, end)
+    else:                               # no prefix -- respect anchor flag
+        if anchor:
+            pattern_re = r'%s\A%s' % (start, pattern_re[len(start):])
+
+    return re.compile(pattern_re)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/log.py

@@ -0,0 +1,77 @@
+"""A simple log mechanism styled after PEP 282."""
+
+# The class here is styled after PEP 282 so that it could later be
+# replaced with a standard Python logging implementation.
+
+DEBUG = 1
+INFO = 2
+WARN = 3
+ERROR = 4
+FATAL = 5
+
+import sys
+
+class Log:
+
+    def __init__(self, threshold=WARN):
+        self.threshold = threshold
+
+    def _log(self, level, msg, args):
+        if level not in (DEBUG, INFO, WARN, ERROR, FATAL):
+            raise ValueError('%s wrong log level' % str(level))
+
+        if level >= self.threshold:
+            if args:
+                msg = msg % args
+            if level in (WARN, ERROR, FATAL):
+                stream = sys.stderr
+            else:
+                stream = sys.stdout
+            try:
+                stream.write('%s\n' % msg)
+            except UnicodeEncodeError:
+                # emulate backslashreplace error handler
+                encoding = stream.encoding
+                msg = msg.encode(encoding, "backslashreplace").decode(encoding)
+                stream.write('%s\n' % msg)
+            stream.flush()
+
+    def log(self, level, msg, *args):
+        self._log(level, msg, args)
+
+    def debug(self, msg, *args):
+        self._log(DEBUG, msg, args)
+
+    def info(self, msg, *args):
+        self._log(INFO, msg, args)
+
+    def warn(self, msg, *args):
+        self._log(WARN, msg, args)
+
+    def error(self, msg, *args):
+        self._log(ERROR, msg, args)
+
+    def fatal(self, msg, *args):
+        self._log(FATAL, msg, args)
+
+_global_log = Log()
+log = _global_log.log
+debug = _global_log.debug
+info = _global_log.info
+warn = _global_log.warn
+error = _global_log.error
+fatal = _global_log.fatal
+
+def set_threshold(level):
+    # return the old threshold for use from tests
+    old = _global_log.threshold
+    _global_log.threshold = level
+    return old
+
+def set_verbosity(v):
+    if v <= 0:
+        set_threshold(WARN)
+    elif v == 1:
+        set_threshold(INFO)
+    elif v >= 2:
+        set_threshold(DEBUG)

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/msvc9compiler.py

@@ -0,0 +1,788 @@
+"""distutils.msvc9compiler
+
+Contains MSVCCompiler, an implementation of the abstract CCompiler class
+for the Microsoft Visual Studio 2008.
+
+The module is compatible with VS 2005 and VS 2008. You can find legacy support
+for older versions of VS in distutils.msvccompiler.
+"""
+
+# Written by Perry Stoll
+# hacked by Robin Becker and Thomas Heller to do a better job of
+#   finding DevStudio (through the registry)
+# ported to VS2005 and VS 2008 by Christian Heimes
+
+import os
+import subprocess
+import sys
+import re
+
+from distutils.errors import DistutilsExecError, DistutilsPlatformError, \
+                             CompileError, LibError, LinkError
+from distutils.ccompiler import CCompiler, gen_lib_options
+from distutils import log
+from distutils.util import get_platform
+
+import winreg
+
+RegOpenKeyEx = winreg.OpenKeyEx
+RegEnumKey = winreg.EnumKey
+RegEnumValue = winreg.EnumValue
+RegError = winreg.error
+
+HKEYS = (winreg.HKEY_USERS,
+         winreg.HKEY_CURRENT_USER,
+         winreg.HKEY_LOCAL_MACHINE,
+         winreg.HKEY_CLASSES_ROOT)
+
+NATIVE_WIN64 = (sys.platform == 'win32' and sys.maxsize > 2**32)
+if NATIVE_WIN64:
+    # Visual C++ is a 32-bit application, so we need to look in
+    # the corresponding registry branch, if we're running a
+    # 64-bit Python on Win64
+    VS_BASE = r"Software\Wow6432Node\Microsoft\VisualStudio\%0.1f"
+    WINSDK_BASE = r"Software\Wow6432Node\Microsoft\Microsoft SDKs\Windows"
+    NET_BASE = r"Software\Wow6432Node\Microsoft\.NETFramework"
+else:
+    VS_BASE = r"Software\Microsoft\VisualStudio\%0.1f"
+    WINSDK_BASE = r"Software\Microsoft\Microsoft SDKs\Windows"
+    NET_BASE = r"Software\Microsoft\.NETFramework"
+
+# A map keyed by get_platform() return values to values accepted by
+# 'vcvarsall.bat'.  Note a cross-compile may combine these (eg, 'x86_amd64' is
+# the param to cross-compile on x86 targeting amd64.)
+PLAT_TO_VCVARS = {
+    'win32' : 'x86',
+    'win-amd64' : 'amd64',
+}
+
+class Reg:
+    """Helper class to read values from the registry
+    """
+
+    def get_value(cls, path, key):
+        for base in HKEYS:
+            d = cls.read_values(base, path)
+            if d and key in d:
+                return d[key]
+        raise KeyError(key)
+    get_value = classmethod(get_value)
+
+    def read_keys(cls, base, key):
+        """Return list of registry keys."""
+        try:
+            handle = RegOpenKeyEx(base, key)
+        except RegError:
+            return None
+        L = []
+        i = 0
+        while True:
+            try:
+                k = RegEnumKey(handle, i)
+            except RegError:
+                break
+            L.append(k)
+            i += 1
+        return L
+    read_keys = classmethod(read_keys)
+
+    def read_values(cls, base, key):
+        """Return dict of registry keys and values.
+
+        All names are converted to lowercase.
+        """
+        try:
+            handle = RegOpenKeyEx(base, key)
+        except RegError:
+            return None
+        d = {}
+        i = 0
+        while True:
+            try:
+                name, value, type = RegEnumValue(handle, i)
+            except RegError:
+                break
+            name = name.lower()
+            d[cls.convert_mbcs(name)] = cls.convert_mbcs(value)
+            i += 1
+        return d
+    read_values = classmethod(read_values)
+
+    def convert_mbcs(s):
+        dec = getattr(s, "decode", None)
+        if dec is not None:
+            try:
+                s = dec("mbcs")
+            except UnicodeError:
+                pass
+        return s
+    convert_mbcs = staticmethod(convert_mbcs)
+
+class MacroExpander:
+
+    def __init__(self, version):
+        self.macros = {}
+        self.vsbase = VS_BASE % version
+        self.load_macros(version)
+
+    def set_macro(self, macro, path, key):
+        self.macros["$(%s)" % macro] = Reg.get_value(path, key)
+
+    def load_macros(self, version):
+        self.set_macro("VCInstallDir", self.vsbase + r"\Setup\VC", "productdir")
+        self.set_macro("VSInstallDir", self.vsbase + r"\Setup\VS", "productdir")
+        self.set_macro("FrameworkDir", NET_BASE, "installroot")
+        try:
+            if version >= 8.0:
+                self.set_macro("FrameworkSDKDir", NET_BASE,
+                               "sdkinstallrootv2.0")
+            else:
+                raise KeyError("sdkinstallrootv2.0")
+        except KeyError:
+            raise DistutilsPlatformError(
+            """Python was built with Visual Studio 2008;
+extensions must be built with a compiler than can generate compatible binaries.
+Visual Studio 2008 was not found on this system. If you have Cygwin installed,
+you can try compiling with MingW32, by passing "-c mingw32" to setup.py.""")
+
+        if version >= 9.0:
+            self.set_macro("FrameworkVersion", self.vsbase, "clr version")
+            self.set_macro("WindowsSdkDir", WINSDK_BASE, "currentinstallfolder")
+        else:
+            p = r"Software\Microsoft\NET Framework Setup\Product"
+            for base in HKEYS:
+                try:
+                    h = RegOpenKeyEx(base, p)
+                except RegError:
+                    continue
+                key = RegEnumKey(h, 0)
+                d = Reg.get_value(base, r"%s\%s" % (p, key))
+                self.macros["$(FrameworkVersion)"] = d["version"]
+
+    def sub(self, s):
+        for k, v in self.macros.items():
+            s = s.replace(k, v)
+        return s
+
+def get_build_version():
+    """Return the version of MSVC that was used to build Python.
+
+    For Python 2.3 and up, the version number is included in
+    sys.version.  For earlier versions, assume the compiler is MSVC 6.
+    """
+    prefix = "MSC v."
+    i = sys.version.find(prefix)
+    if i == -1:
+        return 6
+    i = i + len(prefix)
+    s, rest = sys.version[i:].split(" ", 1)
+    majorVersion = int(s[:-2]) - 6
+    if majorVersion >= 13:
+        # v13 was skipped and should be v14
+        majorVersion += 1
+    minorVersion = int(s[2:3]) / 10.0
+    # I don't think paths are affected by minor version in version 6
+    if majorVersion == 6:
+        minorVersion = 0
+    if majorVersion >= 6:
+        return majorVersion + minorVersion
+    # else we don't know what version of the compiler this is
+    return None
+
+def normalize_and_reduce_paths(paths):
+    """Return a list of normalized paths with duplicates removed.
+
+    The current order of paths is maintained.
+    """
+    # Paths are normalized so things like:  /a and /a/ aren't both preserved.
+    reduced_paths = []
+    for p in paths:
+        np = os.path.normpath(p)
+        # XXX(nnorwitz): O(n**2), if reduced_paths gets long perhaps use a set.
+        if np not in reduced_paths:
+            reduced_paths.append(np)
+    return reduced_paths
+
+def removeDuplicates(variable):
+    """Remove duplicate values of an environment variable.
+    """
+    oldList = variable.split(os.pathsep)
+    newList = []
+    for i in oldList:
+        if i not in newList:
+            newList.append(i)
+    newVariable = os.pathsep.join(newList)
+    return newVariable
+
+def find_vcvarsall(version):
+    """Find the vcvarsall.bat file
+
+    At first it tries to find the productdir of VS 2008 in the registry. If
+    that fails it falls back to the VS90COMNTOOLS env var.
+    """
+    vsbase = VS_BASE % version
+    try:
+        productdir = Reg.get_value(r"%s\Setup\VC" % vsbase,
+                                   "productdir")
+    except KeyError:
+        log.debug("Unable to find productdir in registry")
+        productdir = None
+
+    if not productdir or not os.path.isdir(productdir):
+        toolskey = "VS%0.f0COMNTOOLS" % version
+        toolsdir = os.environ.get(toolskey, None)
+
+        if toolsdir and os.path.isdir(toolsdir):
+            productdir = os.path.join(toolsdir, os.pardir, os.pardir, "VC")
+            productdir = os.path.abspath(productdir)
+            if not os.path.isdir(productdir):
+                log.debug("%s is not a valid directory" % productdir)
+                return None
+        else:
+            log.debug("Env var %s is not set or invalid" % toolskey)
+    if not productdir:
+        log.debug("No productdir found")
+        return None
+    vcvarsall = os.path.join(productdir, "vcvarsall.bat")
+    if os.path.isfile(vcvarsall):
+        return vcvarsall
+    log.debug("Unable to find vcvarsall.bat")
+    return None
+
+def query_vcvarsall(version, arch="x86"):
+    """Launch vcvarsall.bat and read the settings from its environment
+    """
+    vcvarsall = find_vcvarsall(version)
+    interesting = {"include", "lib", "libpath", "path"}
+    result = {}
+
+    if vcvarsall is None:
+        raise DistutilsPlatformError("Unable to find vcvarsall.bat")
+    log.debug("Calling 'vcvarsall.bat %s' (version=%s)", arch, version)
+    popen = subprocess.Popen('"%s" %s & set' % (vcvarsall, arch),
+                             stdout=subprocess.PIPE,
+                             stderr=subprocess.PIPE)
+    try:
+        stdout, stderr = popen.communicate()
+        if popen.wait() != 0:
+            raise DistutilsPlatformError(stderr.decode("mbcs"))
+
+        stdout = stdout.decode("mbcs")
+        for line in stdout.split("\n"):
+            line = Reg.convert_mbcs(line)
+            if '=' not in line:
+                continue
+            line = line.strip()
+            key, value = line.split('=', 1)
+            key = key.lower()
+            if key in interesting:
+                if value.endswith(os.pathsep):
+                    value = value[:-1]
+                result[key] = removeDuplicates(value)
+
+    finally:
+        popen.stdout.close()
+        popen.stderr.close()
+
+    if len(result) != len(interesting):
+        raise ValueError(str(list(result.keys())))
+
+    return result
+
+# More globals
+VERSION = get_build_version()
+if VERSION < 8.0:
+    raise DistutilsPlatformError("VC %0.1f is not supported by this module" % VERSION)
+# MACROS = MacroExpander(VERSION)
+
+class MSVCCompiler(CCompiler) :
+    """Concrete class that implements an interface to Microsoft Visual C++,
+       as defined by the CCompiler abstract class."""
+
+    compiler_type = 'msvc'
+
+    # Just set this so CCompiler's constructor doesn't barf.  We currently
+    # don't use the 'set_executables()' bureaucracy provided by CCompiler,
+    # as it really isn't necessary for this sort of single-compiler class.
+    # Would be nice to have a consistent interface with UnixCCompiler,
+    # though, so it's worth thinking about.
+    executables = {}
+
+    # Private class data (need to distinguish C from C++ source for compiler)
+    _c_extensions = ['.c']
+    _cpp_extensions = ['.cc', '.cpp', '.cxx']
+    _rc_extensions = ['.rc']
+    _mc_extensions = ['.mc']
+
+    # Needed for the filename generation methods provided by the
+    # base class, CCompiler.
+    src_extensions = (_c_extensions + _cpp_extensions +
+                      _rc_extensions + _mc_extensions)
+    res_extension = '.res'
+    obj_extension = '.obj'
+    static_lib_extension = '.lib'
+    shared_lib_extension = '.dll'
+    static_lib_format = shared_lib_format = '%s%s'
+    exe_extension = '.exe'
+
+    def __init__(self, verbose=0, dry_run=0, force=0):
+        CCompiler.__init__ (self, verbose, dry_run, force)
+        self.__version = VERSION
+        self.__root = r"Software\Microsoft\VisualStudio"
+        # self.__macros = MACROS
+        self.__paths = []
+        # target platform (.plat_name is consistent with 'bdist')
+        self.plat_name = None
+        self.__arch = None # deprecated name
+        self.initialized = False
+
+    def initialize(self, plat_name=None):
+        # multi-init means we would need to check platform same each time...
+        assert not self.initialized, "don't init multiple times"
+        if plat_name is None:
+            plat_name = get_platform()
+        # sanity check for platforms to prevent obscure errors later.
+        ok_plats = 'win32', 'win-amd64'
+        if plat_name not in ok_plats:
+            raise DistutilsPlatformError("--plat-name must be one of %s" %
+                                         (ok_plats,))
+
+        if "DISTUTILS_USE_SDK" in os.environ and "MSSdk" in os.environ and self.find_exe("cl.exe"):
+            # Assume that the SDK set up everything alright; don't try to be
+            # smarter
+            self.cc = "cl.exe"
+            self.linker = "link.exe"
+            self.lib = "lib.exe"
+            self.rc = "rc.exe"
+            self.mc = "mc.exe"
+        else:
+            # On x86, 'vcvars32.bat amd64' creates an env that doesn't work;
+            # to cross compile, you use 'x86_amd64'.
+            # On AMD64, 'vcvars32.bat amd64' is a native build env; to cross
+            # compile use 'x86' (ie, it runs the x86 compiler directly)
+            if plat_name == get_platform() or plat_name == 'win32':
+                # native build or cross-compile to win32
+                plat_spec = PLAT_TO_VCVARS[plat_name]
+            else:
+                # cross compile from win32 -> some 64bit
+                plat_spec = PLAT_TO_VCVARS[get_platform()] + '_' + \
+                            PLAT_TO_VCVARS[plat_name]
+
+            vc_env = query_vcvarsall(VERSION, plat_spec)
+
+            self.__paths = vc_env['path'].split(os.pathsep)
+            os.environ['lib'] = vc_env['lib']
+            os.environ['include'] = vc_env['include']
+
+            if len(self.__paths) == 0:
+                raise DistutilsPlatformError("Python was built with %s, "
+                       "and extensions need to be built with the same "
+                       "version of the compiler, but it isn't installed."
+                       % self.__product)
+
+            self.cc = self.find_exe("cl.exe")
+            self.linker = self.find_exe("link.exe")
+            self.lib = self.find_exe("lib.exe")
+            self.rc = self.find_exe("rc.exe")   # resource compiler
+            self.mc = self.find_exe("mc.exe")   # message compiler
+            #self.set_path_env_var('lib')
+            #self.set_path_env_var('include')
+
+        # extend the MSVC path with the current path
+        try:
+            for p in os.environ['path'].split(';'):
+                self.__paths.append(p)
+        except KeyError:
+            pass
+        self.__paths = normalize_and_reduce_paths(self.__paths)
+        os.environ['path'] = ";".join(self.__paths)
+
+        self.preprocess_options = None
+        if self.__arch == "x86":
+            self.compile_options = [ '/nologo', '/O2', '/MD', '/W3',
+                                     '/DNDEBUG']
+            self.compile_options_debug = ['/nologo', '/Od', '/MDd', '/W3',
+                                          '/Z7', '/D_DEBUG']
+        else:
+            # Win64
+            self.compile_options = [ '/nologo', '/O2', '/MD', '/W3', '/GS-' ,
+                                     '/DNDEBUG']
+            self.compile_options_debug = ['/nologo', '/Od', '/MDd', '/W3', '/GS-',
+                                          '/Z7', '/D_DEBUG']
+
+        self.ldflags_shared = ['/DLL', '/nologo', '/INCREMENTAL:NO']
+        if self.__version >= 7:
+            self.ldflags_shared_debug = [
+                '/DLL', '/nologo', '/INCREMENTAL:no', '/DEBUG'
+                ]
+        self.ldflags_static = [ '/nologo']
+
+        self.initialized = True
+
+    # -- Worker methods ------------------------------------------------
+
+    def object_filenames(self,
+                         source_filenames,
+                         strip_dir=0,
+                         output_dir=''):
+        # Copied from ccompiler.py, extended to return .res as 'object'-file
+        # for .rc input file
+        if output_dir is None: output_dir = ''
+        obj_names = []
+        for src_name in source_filenames:
+            (base, ext) = os.path.splitext (src_name)
+            base = os.path.splitdrive(base)[1] # Chop off the drive
+            base = base[os.path.isabs(base):]  # If abs, chop off leading /
+            if ext not in self.src_extensions:
+                # Better to raise an exception instead of silently continuing
+                # and later complain about sources and targets having
+                # different lengths
+                raise CompileError ("Don't know how to compile %s" % src_name)
+            if strip_dir:
+                base = os.path.basename (base)
+            if ext in self._rc_extensions:
+                obj_names.append (os.path.join (output_dir,
+                                                base + self.res_extension))
+            elif ext in self._mc_extensions:
+                obj_names.append (os.path.join (output_dir,
+                                                base + self.res_extension))
+            else:
+                obj_names.append (os.path.join (output_dir,
+                                                base + self.obj_extension))
+        return obj_names
+
+
+    def compile(self, sources,
+                output_dir=None, macros=None, include_dirs=None, debug=0,
+                extra_preargs=None, extra_postargs=None, depends=None):
+
+        if not self.initialized:
+            self.initialize()
+        compile_info = self._setup_compile(output_dir, macros, include_dirs,
+                                           sources, depends, extra_postargs)
+        macros, objects, extra_postargs, pp_opts, build = compile_info
+
+        compile_opts = extra_preargs or []
+        compile_opts.append ('/c')
+        if debug:
+            compile_opts.extend(self.compile_options_debug)
+        else:
+            compile_opts.extend(self.compile_options)
+
+        for obj in objects:
+            try:
+                src, ext = build[obj]
+            except KeyError:
+                continue
+            if debug:
+                # pass the full pathname to MSVC in debug mode,
+                # this allows the debugger to find the source file
+                # without asking the user to browse for it
+                src = os.path.abspath(src)
+
+            if ext in self._c_extensions:
+                input_opt = "/Tc" + src
+            elif ext in self._cpp_extensions:
+                input_opt = "/Tp" + src
+            elif ext in self._rc_extensions:
+                # compile .RC to .RES file
+                input_opt = src
+                output_opt = "/fo" + obj
+                try:
+                    self.spawn([self.rc] + pp_opts +
+                               [output_opt] + [input_opt])
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue
+            elif ext in self._mc_extensions:
+                # Compile .MC to .RC file to .RES file.
+                #   * '-h dir' specifies the directory for the
+                #     generated include file
+                #   * '-r dir' specifies the target directory of the
+                #     generated RC file and the binary message resource
+                #     it includes
+                #
+                # For now (since there are no options to change this),
+                # we use the source-directory for the include file and
+                # the build directory for the RC file and message
+                # resources. This works at least for win32all.
+                h_dir = os.path.dirname(src)
+                rc_dir = os.path.dirname(obj)
+                try:
+                    # first compile .MC to .RC and .H file
+                    self.spawn([self.mc] +
+                               ['-h', h_dir, '-r', rc_dir] + [src])
+                    base, _ = os.path.splitext (os.path.basename (src))
+                    rc_file = os.path.join (rc_dir, base + '.rc')
+                    # then compile .RC to .RES file
+                    self.spawn([self.rc] +
+                               ["/fo" + obj] + [rc_file])
+
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue
+            else:
+                # how to handle this file?
+                raise CompileError("Don't know how to compile %s to %s"
+                                   % (src, obj))
+
+            output_opt = "/Fo" + obj
+            try:
+                self.spawn([self.cc] + compile_opts + pp_opts +
+                           [input_opt, output_opt] +
+                           extra_postargs)
+            except DistutilsExecError as msg:
+                raise CompileError(msg)
+
+        return objects
+
+
+    def create_static_lib(self,
+                          objects,
+                          output_libname,
+                          output_dir=None,
+                          debug=0,
+                          target_lang=None):
+
+        if not self.initialized:
+            self.initialize()
+        (objects, output_dir) = self._fix_object_args(objects, output_dir)
+        output_filename = self.library_filename(output_libname,
+                                                output_dir=output_dir)
+
+        if self._need_link(objects, output_filename):
+            lib_args = objects + ['/OUT:' + output_filename]
+            if debug:
+                pass # XXX what goes here?
+            try:
+                self.spawn([self.lib] + lib_args)
+            except DistutilsExecError as msg:
+                raise LibError(msg)
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+
+    def link(self,
+             target_desc,
+             objects,
+             output_filename,
+             output_dir=None,
+             libraries=None,
+             library_dirs=None,
+             runtime_library_dirs=None,
+             export_symbols=None,
+             debug=0,
+             extra_preargs=None,
+             extra_postargs=None,
+             build_temp=None,
+             target_lang=None):
+
+        if not self.initialized:
+            self.initialize()
+        (objects, output_dir) = self._fix_object_args(objects, output_dir)
+        fixed_args = self._fix_lib_args(libraries, library_dirs,
+                                        runtime_library_dirs)
+        (libraries, library_dirs, runtime_library_dirs) = fixed_args
+
+        if runtime_library_dirs:
+            self.warn ("I don't know what to do with 'runtime_library_dirs': "
+                       + str (runtime_library_dirs))
+
+        lib_opts = gen_lib_options(self,
+                                   library_dirs, runtime_library_dirs,
+                                   libraries)
+        if output_dir is not None:
+            output_filename = os.path.join(output_dir, output_filename)
+
+        if self._need_link(objects, output_filename):
+            if target_desc == CCompiler.EXECUTABLE:
+                if debug:
+                    ldflags = self.ldflags_shared_debug[1:]
+                else:
+                    ldflags = self.ldflags_shared[1:]
+            else:
+                if debug:
+                    ldflags = self.ldflags_shared_debug
+                else:
+                    ldflags = self.ldflags_shared
+
+            export_opts = []
+            for sym in (export_symbols or []):
+                export_opts.append("/EXPORT:" + sym)
+
+            ld_args = (ldflags + lib_opts + export_opts +
+                       objects + ['/OUT:' + output_filename])
+
+            # The MSVC linker generates .lib and .exp files, which cannot be
+            # suppressed by any linker switches. The .lib files may even be
+            # needed! Make sure they are generated in the temporary build
+            # directory. Since they have different names for debug and release
+            # builds, they can go into the same directory.
+            build_temp = os.path.dirname(objects[0])
+            if export_symbols is not None:
+                (dll_name, dll_ext) = os.path.splitext(
+                    os.path.basename(output_filename))
+                implib_file = os.path.join(
+                    build_temp,
+                    self.library_filename(dll_name))
+                ld_args.append ('/IMPLIB:' + implib_file)
+
+            self.manifest_setup_ldargs(output_filename, build_temp, ld_args)
+
+            if extra_preargs:
+                ld_args[:0] = extra_preargs
+            if extra_postargs:
+                ld_args.extend(extra_postargs)
+
+            self.mkpath(os.path.dirname(output_filename))
+            try:
+                self.spawn([self.linker] + ld_args)
+            except DistutilsExecError as msg:
+                raise LinkError(msg)
+
+            # embed the manifest
+            # XXX - this is somewhat fragile - if mt.exe fails, distutils
+            # will still consider the DLL up-to-date, but it will not have a
+            # manifest.  Maybe we should link to a temp file?  OTOH, that
+            # implies a build environment error that shouldn't go undetected.
+            mfinfo = self.manifest_get_embed_info(target_desc, ld_args)
+            if mfinfo is not None:
+                mffilename, mfid = mfinfo
+                out_arg = '-outputresource:%s;%s' % (output_filename, mfid)
+                try:
+                    self.spawn(['mt.exe', '-nologo', '-manifest',
+                                mffilename, out_arg])
+                except DistutilsExecError as msg:
+                    raise LinkError(msg)
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+    def manifest_setup_ldargs(self, output_filename, build_temp, ld_args):
+        # If we need a manifest at all, an embedded manifest is recommended.
+        # See MSDN article titled
+        # "How to: Embed a Manifest Inside a C/C++ Application"
+        # (currently at http://msdn2.microsoft.com/en-us/library/ms235591(VS.80).aspx)
+        # Ask the linker to generate the manifest in the temp dir, so
+        # we can check it, and possibly embed it, later.
+        temp_manifest = os.path.join(
+                build_temp,
+                os.path.basename(output_filename) + ".manifest")
+        ld_args.append('/MANIFESTFILE:' + temp_manifest)
+
+    def manifest_get_embed_info(self, target_desc, ld_args):
+        # If a manifest should be embedded, return a tuple of
+        # (manifest_filename, resource_id).  Returns None if no manifest
+        # should be embedded.  See http://bugs.python.org/issue7833 for why
+        # we want to avoid any manifest for extension modules if we can)
+        for arg in ld_args:
+            if arg.startswith("/MANIFESTFILE:"):
+                temp_manifest = arg.split(":", 1)[1]
+                break
+        else:
+            # no /MANIFESTFILE so nothing to do.
+            return None
+        if target_desc == CCompiler.EXECUTABLE:
+            # by default, executables always get the manifest with the
+            # CRT referenced.
+            mfid = 1
+        else:
+            # Extension modules try and avoid any manifest if possible.
+            mfid = 2
+            temp_manifest = self._remove_visual_c_ref(temp_manifest)
+        if temp_manifest is None:
+            return None
+        return temp_manifest, mfid
+
+    def _remove_visual_c_ref(self, manifest_file):
+        try:
+            # Remove references to the Visual C runtime, so they will
+            # fall through to the Visual C dependency of Python.exe.
+            # This way, when installed for a restricted user (e.g.
+            # runtimes are not in WinSxS folder, but in Python's own
+            # folder), the runtimes do not need to be in every folder
+            # with .pyd's.
+            # Returns either the filename of the modified manifest or
+            # None if no manifest should be embedded.
+            manifest_f = open(manifest_file)
+            try:
+                manifest_buf = manifest_f.read()
+            finally:
+                manifest_f.close()
+            pattern = re.compile(
+                r"""<assemblyIdentity.*?name=("|')Microsoft\."""\
+                r"""VC\d{2}\.CRT("|').*?(/>|</assemblyIdentity>)""",
+                re.DOTALL)
+            manifest_buf = re.sub(pattern, "", manifest_buf)
+            pattern = r"<dependentAssembly>\s*</dependentAssembly>"
+            manifest_buf = re.sub(pattern, "", manifest_buf)
+            # Now see if any other assemblies are referenced - if not, we
+            # don't want a manifest embedded.
+            pattern = re.compile(
+                r"""<assemblyIdentity.*?name=(?:"|')(.+?)(?:"|')"""
+                r""".*?(?:/>|</assemblyIdentity>)""", re.DOTALL)
+            if re.search(pattern, manifest_buf) is None:
+                return None
+
+            manifest_f = open(manifest_file, 'w')
+            try:
+                manifest_f.write(manifest_buf)
+                return manifest_file
+            finally:
+                manifest_f.close()
+        except OSError:
+            pass
+
+    # -- Miscellaneous methods -----------------------------------------
+    # These are all used by the 'gen_lib_options() function, in
+    # ccompiler.py.
+
+    def library_dir_option(self, dir):
+        return "/LIBPATH:" + dir
+
+    def runtime_library_dir_option(self, dir):
+        raise DistutilsPlatformError(
+              "don't know how to set runtime library search path for MSVC++")
+
+    def library_option(self, lib):
+        return self.library_filename(lib)
+
+
+    def find_library_file(self, dirs, lib, debug=0):
+        # Prefer a debugging library if found (and requested), but deal
+        # with it if we don't have one.
+        if debug:
+            try_names = [lib + "_d", lib]
+        else:
+            try_names = [lib]
+        for dir in dirs:
+            for name in try_names:
+                libfile = os.path.join(dir, self.library_filename (name))
+                if os.path.exists(libfile):
+                    return libfile
+        else:
+            # Oops, didn't find it in *any* of 'dirs'
+            return None
+
+    # Helper methods for using the MSVC registry settings
+
+    def find_exe(self, exe):
+        """Return path to an MSVC executable program.
+
+        Tries to find the program in several places: first, one of the
+        MSVC program search paths from the registry; next, the directories
+        in the PATH environment variable.  If any of those work, return an
+        absolute path that is known to exist.  If none of them work, just
+        return the original program name, 'exe'.
+        """
+        for p in self.__paths:
+            fn = os.path.join(os.path.abspath(p), exe)
+            if os.path.isfile(fn):
+                return fn
+
+        # didn't find it; try existing path
+        for p in os.environ['Path'].split(';'):
+            fn = os.path.join(os.path.abspath(p),exe)
+            if os.path.isfile(fn):
+                return fn
+
+        return exe

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/msvccompiler.py

@@ -0,0 +1,643 @@
+"""distutils.msvccompiler
+
+Contains MSVCCompiler, an implementation of the abstract CCompiler class
+for the Microsoft Visual Studio.
+"""
+
+# Written by Perry Stoll
+# hacked by Robin Becker and Thomas Heller to do a better job of
+#   finding DevStudio (through the registry)
+
+import sys, os
+from distutils.errors import \
+     DistutilsExecError, DistutilsPlatformError, \
+     CompileError, LibError, LinkError
+from distutils.ccompiler import \
+     CCompiler, gen_lib_options
+from distutils import log
+
+_can_read_reg = False
+try:
+    import winreg
+
+    _can_read_reg = True
+    hkey_mod = winreg
+
+    RegOpenKeyEx = winreg.OpenKeyEx
+    RegEnumKey = winreg.EnumKey
+    RegEnumValue = winreg.EnumValue
+    RegError = winreg.error
+
+except ImportError:
+    try:
+        import win32api
+        import win32con
+        _can_read_reg = True
+        hkey_mod = win32con
+
+        RegOpenKeyEx = win32api.RegOpenKeyEx
+        RegEnumKey = win32api.RegEnumKey
+        RegEnumValue = win32api.RegEnumValue
+        RegError = win32api.error
+    except ImportError:
+        log.info("Warning: Can't read registry to find the "
+                 "necessary compiler setting\n"
+                 "Make sure that Python modules winreg, "
+                 "win32api or win32con are installed.")
+        pass
+
+if _can_read_reg:
+    HKEYS = (hkey_mod.HKEY_USERS,
+             hkey_mod.HKEY_CURRENT_USER,
+             hkey_mod.HKEY_LOCAL_MACHINE,
+             hkey_mod.HKEY_CLASSES_ROOT)
+
+def read_keys(base, key):
+    """Return list of registry keys."""
+    try:
+        handle = RegOpenKeyEx(base, key)
+    except RegError:
+        return None
+    L = []
+    i = 0
+    while True:
+        try:
+            k = RegEnumKey(handle, i)
+        except RegError:
+            break
+        L.append(k)
+        i += 1
+    return L
+
+def read_values(base, key):
+    """Return dict of registry keys and values.
+
+    All names are converted to lowercase.
+    """
+    try:
+        handle = RegOpenKeyEx(base, key)
+    except RegError:
+        return None
+    d = {}
+    i = 0
+    while True:
+        try:
+            name, value, type = RegEnumValue(handle, i)
+        except RegError:
+            break
+        name = name.lower()
+        d[convert_mbcs(name)] = convert_mbcs(value)
+        i += 1
+    return d
+
+def convert_mbcs(s):
+    dec = getattr(s, "decode", None)
+    if dec is not None:
+        try:
+            s = dec("mbcs")
+        except UnicodeError:
+            pass
+    return s
+
+class MacroExpander:
+    def __init__(self, version):
+        self.macros = {}
+        self.load_macros(version)
+
+    def set_macro(self, macro, path, key):
+        for base in HKEYS:
+            d = read_values(base, path)
+            if d:
+                self.macros["$(%s)" % macro] = d[key]
+                break
+
+    def load_macros(self, version):
+        vsbase = r"Software\Microsoft\VisualStudio\%0.1f" % version
+        self.set_macro("VCInstallDir", vsbase + r"\Setup\VC", "productdir")
+        self.set_macro("VSInstallDir", vsbase + r"\Setup\VS", "productdir")
+        net = r"Software\Microsoft\.NETFramework"
+        self.set_macro("FrameworkDir", net, "installroot")
+        try:
+            if version > 7.0:
+                self.set_macro("FrameworkSDKDir", net, "sdkinstallrootv1.1")
+            else:
+                self.set_macro("FrameworkSDKDir", net, "sdkinstallroot")
+        except KeyError as exc: #
+            raise DistutilsPlatformError(
+            """Python was built with Visual Studio 2003;
+extensions must be built with a compiler than can generate compatible binaries.
+Visual Studio 2003 was not found on this system. If you have Cygwin installed,
+you can try compiling with MingW32, by passing "-c mingw32" to setup.py.""")
+
+        p = r"Software\Microsoft\NET Framework Setup\Product"
+        for base in HKEYS:
+            try:
+                h = RegOpenKeyEx(base, p)
+            except RegError:
+                continue
+            key = RegEnumKey(h, 0)
+            d = read_values(base, r"%s\%s" % (p, key))
+            self.macros["$(FrameworkVersion)"] = d["version"]
+
+    def sub(self, s):
+        for k, v in self.macros.items():
+            s = s.replace(k, v)
+        return s
+
+def get_build_version():
+    """Return the version of MSVC that was used to build Python.
+
+    For Python 2.3 and up, the version number is included in
+    sys.version.  For earlier versions, assume the compiler is MSVC 6.
+    """
+    prefix = "MSC v."
+    i = sys.version.find(prefix)
+    if i == -1:
+        return 6
+    i = i + len(prefix)
+    s, rest = sys.version[i:].split(" ", 1)
+    majorVersion = int(s[:-2]) - 6
+    if majorVersion >= 13:
+        # v13 was skipped and should be v14
+        majorVersion += 1
+    minorVersion = int(s[2:3]) / 10.0
+    # I don't think paths are affected by minor version in version 6
+    if majorVersion == 6:
+        minorVersion = 0
+    if majorVersion >= 6:
+        return majorVersion + minorVersion
+    # else we don't know what version of the compiler this is
+    return None
+
+def get_build_architecture():
+    """Return the processor architecture.
+
+    Possible results are "Intel" or "AMD64".
+    """
+
+    prefix = " bit ("
+    i = sys.version.find(prefix)
+    if i == -1:
+        return "Intel"
+    j = sys.version.find(")", i)
+    return sys.version[i+len(prefix):j]
+
+def normalize_and_reduce_paths(paths):
+    """Return a list of normalized paths with duplicates removed.
+
+    The current order of paths is maintained.
+    """
+    # Paths are normalized so things like:  /a and /a/ aren't both preserved.
+    reduced_paths = []
+    for p in paths:
+        np = os.path.normpath(p)
+        # XXX(nnorwitz): O(n**2), if reduced_paths gets long perhaps use a set.
+        if np not in reduced_paths:
+            reduced_paths.append(np)
+    return reduced_paths
+
+
+class MSVCCompiler(CCompiler) :
+    """Concrete class that implements an interface to Microsoft Visual C++,
+       as defined by the CCompiler abstract class."""
+
+    compiler_type = 'msvc'
+
+    # Just set this so CCompiler's constructor doesn't barf.  We currently
+    # don't use the 'set_executables()' bureaucracy provided by CCompiler,
+    # as it really isn't necessary for this sort of single-compiler class.
+    # Would be nice to have a consistent interface with UnixCCompiler,
+    # though, so it's worth thinking about.
+    executables = {}
+
+    # Private class data (need to distinguish C from C++ source for compiler)
+    _c_extensions = ['.c']
+    _cpp_extensions = ['.cc', '.cpp', '.cxx']
+    _rc_extensions = ['.rc']
+    _mc_extensions = ['.mc']
+
+    # Needed for the filename generation methods provided by the
+    # base class, CCompiler.
+    src_extensions = (_c_extensions + _cpp_extensions +
+                      _rc_extensions + _mc_extensions)
+    res_extension = '.res'
+    obj_extension = '.obj'
+    static_lib_extension = '.lib'
+    shared_lib_extension = '.dll'
+    static_lib_format = shared_lib_format = '%s%s'
+    exe_extension = '.exe'
+
+    def __init__(self, verbose=0, dry_run=0, force=0):
+        CCompiler.__init__ (self, verbose, dry_run, force)
+        self.__version = get_build_version()
+        self.__arch = get_build_architecture()
+        if self.__arch == "Intel":
+            # x86
+            if self.__version >= 7:
+                self.__root = r"Software\Microsoft\VisualStudio"
+                self.__macros = MacroExpander(self.__version)
+            else:
+                self.__root = r"Software\Microsoft\Devstudio"
+            self.__product = "Visual Studio version %s" % self.__version
+        else:
+            # Win64. Assume this was built with the platform SDK
+            self.__product = "Microsoft SDK compiler %s" % (self.__version + 6)
+
+        self.initialized = False
+
+    def initialize(self):
+        self.__paths = []
+        if "DISTUTILS_USE_SDK" in os.environ and "MSSdk" in os.environ and self.find_exe("cl.exe"):
+            # Assume that the SDK set up everything alright; don't try to be
+            # smarter
+            self.cc = "cl.exe"
+            self.linker = "link.exe"
+            self.lib = "lib.exe"
+            self.rc = "rc.exe"
+            self.mc = "mc.exe"
+        else:
+            self.__paths = self.get_msvc_paths("path")
+
+            if len(self.__paths) == 0:
+                raise DistutilsPlatformError("Python was built with %s, "
+                       "and extensions need to be built with the same "
+                       "version of the compiler, but it isn't installed."
+                       % self.__product)
+
+            self.cc = self.find_exe("cl.exe")
+            self.linker = self.find_exe("link.exe")
+            self.lib = self.find_exe("lib.exe")
+            self.rc = self.find_exe("rc.exe")   # resource compiler
+            self.mc = self.find_exe("mc.exe")   # message compiler
+            self.set_path_env_var('lib')
+            self.set_path_env_var('include')
+
+        # extend the MSVC path with the current path
+        try:
+            for p in os.environ['path'].split(';'):
+                self.__paths.append(p)
+        except KeyError:
+            pass
+        self.__paths = normalize_and_reduce_paths(self.__paths)
+        os.environ['path'] = ";".join(self.__paths)
+
+        self.preprocess_options = None
+        if self.__arch == "Intel":
+            self.compile_options = [ '/nologo', '/O2', '/MD', '/W3', '/GX' ,
+                                     '/DNDEBUG']
+            self.compile_options_debug = ['/nologo', '/Od', '/MDd', '/W3', '/GX',
+                                          '/Z7', '/D_DEBUG']
+        else:
+            # Win64
+            self.compile_options = [ '/nologo', '/O2', '/MD', '/W3', '/GS-' ,
+                                     '/DNDEBUG']
+            self.compile_options_debug = ['/nologo', '/Od', '/MDd', '/W3', '/GS-',
+                                          '/Z7', '/D_DEBUG']
+
+        self.ldflags_shared = ['/DLL', '/nologo', '/INCREMENTAL:NO']
+        if self.__version >= 7:
+            self.ldflags_shared_debug = [
+                '/DLL', '/nologo', '/INCREMENTAL:no', '/DEBUG'
+                ]
+        else:
+            self.ldflags_shared_debug = [
+                '/DLL', '/nologo', '/INCREMENTAL:no', '/pdb:None', '/DEBUG'
+                ]
+        self.ldflags_static = [ '/nologo']
+
+        self.initialized = True
+
+    # -- Worker methods ------------------------------------------------
+
+    def object_filenames(self,
+                         source_filenames,
+                         strip_dir=0,
+                         output_dir=''):
+        # Copied from ccompiler.py, extended to return .res as 'object'-file
+        # for .rc input file
+        if output_dir is None: output_dir = ''
+        obj_names = []
+        for src_name in source_filenames:
+            (base, ext) = os.path.splitext (src_name)
+            base = os.path.splitdrive(base)[1] # Chop off the drive
+            base = base[os.path.isabs(base):]  # If abs, chop off leading /
+            if ext not in self.src_extensions:
+                # Better to raise an exception instead of silently continuing
+                # and later complain about sources and targets having
+                # different lengths
+                raise CompileError ("Don't know how to compile %s" % src_name)
+            if strip_dir:
+                base = os.path.basename (base)
+            if ext in self._rc_extensions:
+                obj_names.append (os.path.join (output_dir,
+                                                base + self.res_extension))
+            elif ext in self._mc_extensions:
+                obj_names.append (os.path.join (output_dir,
+                                                base + self.res_extension))
+            else:
+                obj_names.append (os.path.join (output_dir,
+                                                base + self.obj_extension))
+        return obj_names
+
+
+    def compile(self, sources,
+                output_dir=None, macros=None, include_dirs=None, debug=0,
+                extra_preargs=None, extra_postargs=None, depends=None):
+
+        if not self.initialized:
+            self.initialize()
+        compile_info = self._setup_compile(output_dir, macros, include_dirs,
+                                           sources, depends, extra_postargs)
+        macros, objects, extra_postargs, pp_opts, build = compile_info
+
+        compile_opts = extra_preargs or []
+        compile_opts.append ('/c')
+        if debug:
+            compile_opts.extend(self.compile_options_debug)
+        else:
+            compile_opts.extend(self.compile_options)
+
+        for obj in objects:
+            try:
+                src, ext = build[obj]
+            except KeyError:
+                continue
+            if debug:
+                # pass the full pathname to MSVC in debug mode,
+                # this allows the debugger to find the source file
+                # without asking the user to browse for it
+                src = os.path.abspath(src)
+
+            if ext in self._c_extensions:
+                input_opt = "/Tc" + src
+            elif ext in self._cpp_extensions:
+                input_opt = "/Tp" + src
+            elif ext in self._rc_extensions:
+                # compile .RC to .RES file
+                input_opt = src
+                output_opt = "/fo" + obj
+                try:
+                    self.spawn([self.rc] + pp_opts +
+                               [output_opt] + [input_opt])
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue
+            elif ext in self._mc_extensions:
+                # Compile .MC to .RC file to .RES file.
+                #   * '-h dir' specifies the directory for the
+                #     generated include file
+                #   * '-r dir' specifies the target directory of the
+                #     generated RC file and the binary message resource
+                #     it includes
+                #
+                # For now (since there are no options to change this),
+                # we use the source-directory for the include file and
+                # the build directory for the RC file and message
+                # resources. This works at least for win32all.
+                h_dir = os.path.dirname(src)
+                rc_dir = os.path.dirname(obj)
+                try:
+                    # first compile .MC to .RC and .H file
+                    self.spawn([self.mc] +
+                               ['-h', h_dir, '-r', rc_dir] + [src])
+                    base, _ = os.path.splitext (os.path.basename (src))
+                    rc_file = os.path.join (rc_dir, base + '.rc')
+                    # then compile .RC to .RES file
+                    self.spawn([self.rc] +
+                               ["/fo" + obj] + [rc_file])
+
+                except DistutilsExecError as msg:
+                    raise CompileError(msg)
+                continue
+            else:
+                # how to handle this file?
+                raise CompileError("Don't know how to compile %s to %s"
+                                   % (src, obj))
+
+            output_opt = "/Fo" + obj
+            try:
+                self.spawn([self.cc] + compile_opts + pp_opts +
+                           [input_opt, output_opt] +
+                           extra_postargs)
+            except DistutilsExecError as msg:
+                raise CompileError(msg)
+
+        return objects
+
+
+    def create_static_lib(self,
+                          objects,
+                          output_libname,
+                          output_dir=None,
+                          debug=0,
+                          target_lang=None):
+
+        if not self.initialized:
+            self.initialize()
+        (objects, output_dir) = self._fix_object_args(objects, output_dir)
+        output_filename = self.library_filename(output_libname,
+                                                output_dir=output_dir)
+
+        if self._need_link(objects, output_filename):
+            lib_args = objects + ['/OUT:' + output_filename]
+            if debug:
+                pass # XXX what goes here?
+            try:
+                self.spawn([self.lib] + lib_args)
+            except DistutilsExecError as msg:
+                raise LibError(msg)
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+
+    def link(self,
+             target_desc,
+             objects,
+             output_filename,
+             output_dir=None,
+             libraries=None,
+             library_dirs=None,
+             runtime_library_dirs=None,
+             export_symbols=None,
+             debug=0,
+             extra_preargs=None,
+             extra_postargs=None,
+             build_temp=None,
+             target_lang=None):
+
+        if not self.initialized:
+            self.initialize()
+        (objects, output_dir) = self._fix_object_args(objects, output_dir)
+        fixed_args = self._fix_lib_args(libraries, library_dirs,
+                                        runtime_library_dirs)
+        (libraries, library_dirs, runtime_library_dirs) = fixed_args
+
+        if runtime_library_dirs:
+            self.warn ("I don't know what to do with 'runtime_library_dirs': "
+                       + str (runtime_library_dirs))
+
+        lib_opts = gen_lib_options(self,
+                                   library_dirs, runtime_library_dirs,
+                                   libraries)
+        if output_dir is not None:
+            output_filename = os.path.join(output_dir, output_filename)
+
+        if self._need_link(objects, output_filename):
+            if target_desc == CCompiler.EXECUTABLE:
+                if debug:
+                    ldflags = self.ldflags_shared_debug[1:]
+                else:
+                    ldflags = self.ldflags_shared[1:]
+            else:
+                if debug:
+                    ldflags = self.ldflags_shared_debug
+                else:
+                    ldflags = self.ldflags_shared
+
+            export_opts = []
+            for sym in (export_symbols or []):
+                export_opts.append("/EXPORT:" + sym)
+
+            ld_args = (ldflags + lib_opts + export_opts +
+                       objects + ['/OUT:' + output_filename])
+
+            # The MSVC linker generates .lib and .exp files, which cannot be
+            # suppressed by any linker switches. The .lib files may even be
+            # needed! Make sure they are generated in the temporary build
+            # directory. Since they have different names for debug and release
+            # builds, they can go into the same directory.
+            if export_symbols is not None:
+                (dll_name, dll_ext) = os.path.splitext(
+                    os.path.basename(output_filename))
+                implib_file = os.path.join(
+                    os.path.dirname(objects[0]),
+                    self.library_filename(dll_name))
+                ld_args.append ('/IMPLIB:' + implib_file)
+
+            if extra_preargs:
+                ld_args[:0] = extra_preargs
+            if extra_postargs:
+                ld_args.extend(extra_postargs)
+
+            self.mkpath(os.path.dirname(output_filename))
+            try:
+                self.spawn([self.linker] + ld_args)
+            except DistutilsExecError as msg:
+                raise LinkError(msg)
+
+        else:
+            log.debug("skipping %s (up-to-date)", output_filename)
+
+
+    # -- Miscellaneous methods -----------------------------------------
+    # These are all used by the 'gen_lib_options() function, in
+    # ccompiler.py.
+
+    def library_dir_option(self, dir):
+        return "/LIBPATH:" + dir
+
+    def runtime_library_dir_option(self, dir):
+        raise DistutilsPlatformError(
+              "don't know how to set runtime library search path for MSVC++")
+
+    def library_option(self, lib):
+        return self.library_filename(lib)
+
+
+    def find_library_file(self, dirs, lib, debug=0):
+        # Prefer a debugging library if found (and requested), but deal
+        # with it if we don't have one.
+        if debug:
+            try_names = [lib + "_d", lib]
+        else:
+            try_names = [lib]
+        for dir in dirs:
+            for name in try_names:
+                libfile = os.path.join(dir, self.library_filename (name))
+                if os.path.exists(libfile):
+                    return libfile
+        else:
+            # Oops, didn't find it in *any* of 'dirs'
+            return None
+
+    # Helper methods for using the MSVC registry settings
+
+    def find_exe(self, exe):
+        """Return path to an MSVC executable program.
+
+        Tries to find the program in several places: first, one of the
+        MSVC program search paths from the registry; next, the directories
+        in the PATH environment variable.  If any of those work, return an
+        absolute path that is known to exist.  If none of them work, just
+        return the original program name, 'exe'.
+        """
+        for p in self.__paths:
+            fn = os.path.join(os.path.abspath(p), exe)
+            if os.path.isfile(fn):
+                return fn
+
+        # didn't find it; try existing path
+        for p in os.environ['Path'].split(';'):
+            fn = os.path.join(os.path.abspath(p),exe)
+            if os.path.isfile(fn):
+                return fn
+
+        return exe
+
+    def get_msvc_paths(self, path, platform='x86'):
+        """Get a list of devstudio directories (include, lib or path).
+
+        Return a list of strings.  The list will be empty if unable to
+        access the registry or appropriate registry keys not found.
+        """
+        if not _can_read_reg:
+            return []
+
+        path = path + " dirs"
+        if self.__version >= 7:
+            key = (r"%s\%0.1f\VC\VC_OBJECTS_PLATFORM_INFO\Win32\Directories"
+                   % (self.__root, self.__version))
+        else:
+            key = (r"%s\6.0\Build System\Components\Platforms"
+                   r"\Win32 (%s)\Directories" % (self.__root, platform))
+
+        for base in HKEYS:
+            d = read_values(base, key)
+            if d:
+                if self.__version >= 7:
+                    return self.__macros.sub(d[path]).split(";")
+                else:
+                    return d[path].split(";")
+        # MSVC 6 seems to create the registry entries we need only when
+        # the GUI is run.
+        if self.__version == 6:
+            for base in HKEYS:
+                if read_values(base, r"%s\6.0" % self.__root) is not None:
+                    self.warn("It seems you have Visual Studio 6 installed, "
+                        "but the expected registry settings are not present.\n"
+                        "You must at least run the Visual Studio GUI once "
+                        "so that these entries are created.")
+                    break
+        return []
+
+    def set_path_env_var(self, name):
+        """Set environment variable 'name' to an MSVC path type value.
+
+        This is equivalent to a SET command prior to execution of spawned
+        commands.
+        """
+
+        if name == "lib":
+            p = self.get_msvc_paths("library")
+        else:
+            p = self.get_msvc_paths(name)
+        if p:
+            os.environ[name] = ';'.join(p)
+
+
+if get_build_version() >= 8.0:
+    log.debug("Importing new compiler from distutils.msvc9compiler")
+    OldMSVCCompiler = MSVCCompiler
+    from distutils.msvc9compiler import MSVCCompiler
+    # get_build_architecture not really relevant now we support cross-compile
+    from distutils.msvc9compiler import MacroExpander

MidasHMM/lib/python3.9/site-packages/setuptools/_distutils/py35compat.py

@@ -0,0 +1,19 @@
+import sys
+import subprocess
+
+
+def __optim_args_from_interpreter_flags():
+    """Return a list of command-line arguments reproducing the current
+    optimization settings in sys.flags."""
+    args = []
+    value = sys.flags.optimize
+    if value > 0:
+        args.append("-" + "O" * value)
+    return args
+
+
+_optim_args_from_interpreter_flags = getattr(
+    subprocess,
+    "_optim_args_from_interpreter_flags",
+    __optim_args_from_interpreter_flags,
+)